BtaINT0131709 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015979 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:20881200-20881673:-
Coord C1 exon
chr19:20881482-20881673
Coord A exon
chr19:20881398-20881481
Coord C2 exon
chr19:20881200-20881397
Length
84 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
GGGCCCTGCCTGTTTTGCAGTGG
3' ss Score
6.02
Exon sequences
Seq C1 exon
TGACTTCCTGTCTCGACCCTGGGGATGTGGAACACAGCCGACGTCTCATATCGAGCCCTAAGTTCCCCGTGGGGGCCACTGTGCAGTATATCTGTGACCAGGGTTTTGTGCTGACGGGTAGTGCCCTCCTCACCTGCCATGACCGCCAAGCCAGCAGCCCCAAGTGGAGTGACCGGGCCCCCAAATGTCTCC
Seq A exon
GTGAGTTCAAACGGGGAGGTGAGAGGATGCTGCCTCTGGCGGCTAGGGGCCTGGCACCCTCACTGGGCCCTGCCTGTTTTGCAG
Seq C2 exon
TGGAACAGCTCAAACCGTGCCATGGCCTCAGCGCCCCCGAGAATGGTGCCCGCAGTCCCGAGAAGCGGCTGCACCCAGCGGGGGCTACTGTCCACTTCTCATGTGCCCCTGGCTATGTGCTGAAGGGCCAGGCCAGCATCAAGTGTGTGCCCGGACACCCCTCACATTGGAGTGACCCCCCGCCCATCTGTAGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015979:ENSBTAT00000021257:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
NA
C2:
PF0008415=Sushi=WD(100=86.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCCGACGTCTCATATCG
R:
ATGGCACGGTTTGAGCTGTTC
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]