GgaINT1027084 @ galGal4
Intron Retention
Gene
ENSGALG00000013370 | Sema3F
Description
semaphorin-3F precursor [Source:RefSeq peptide;Acc:NP_989589]
Coordinates
chr12:3184866-3185272:+
Coord C1 exon
chr12:3184866-3184954
Coord A exon
chr12:3184955-3185230
Coord C2 exon
chr12:3185231-3185272
Length
276 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCACTCCTGCTCCCATCTAGGTG
3' ss Score
10.21
Exon sequences
Seq C1 exon
ATCGGGGCACGGTGCAGAAAGTCATTGTGCTGCCCCGGGACGACATGGAGACAGAGGAGCTGATGCTGGAGGAGATCGAGGTGTTCAAG
Seq A exon
GTAAGGGCTGGGTAATCCTACAGCTGCTGTTGAGCATCCTTGGCTCACCCCATGCCCAGAACTGATGGGACACCACCGCCACCAAGTGTCATTGTCCCAGCCCTGGAGCTGCTGGGACACCAACCAGTCCCATGGGCAGTTCCAGGGAGACCCACAACATTGTCCCTCTTCCTGCTGACTTTTGTAGCTGCCTTTGCAGTCCCCCAGCTACTGGTATGGGCATGGGGGATGCACTCTGTGCTTCACTCCGTGCCCTTCACTCCTGCTCCCATCTAG
Seq C2 exon
GTGCCAGCACCCATCAAGATGATGACCATCTCCTCCAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013370:ENSGALT00000035766:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(6.6=100)
A:
NA
C2:
PF0140314=Sema=FE(2.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]