GgaINT1027087 @ galGal4
Intron Retention
Gene
ENSGALG00000013370 | Sema3F
Description
semaphorin-3F precursor [Source:RefSeq peptide;Acc:NP_989589]
Coordinates
chr12:3185697-3186750:+
Coord C1 exon
chr12:3185697-3185764
Coord A exon
chr12:3185765-3186616
Coord C2 exon
chr12:3186617-3186750
Length
852 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GCCGCGTCCTGCTCCTGCAGCCA
3' ss Score
8.62
Exon sequences
Seq C1 exon
GCGGAGCAGGCGGCAGGACGTCCGGCACGGCAACCCCATGCGCCAGTGCCGAGGCTACAACTCCAATG
Seq A exon
GTGAGTGGGCATGGCACGACCCCACAGTGTTGGGGGGCAGAGGTGTGGGGCAGGACCTGGGGAAGCGTGAGTGGTAGGAGGTGGGAGAGTGTGGGCAATGGGATTGAGAGGGATGAGAGGGTGGGTGGCCTTGAGGCTGGTGGGTGGATCTATTGGAAAAGTGTAGGATGTACTGGAAAAGCACCATGGGGTAGGCAGGTGGGTGGATGTATGCATGGAGGAATGGTTGGGGTGAGTGTGTGGATGAATGGAAATACTGGAGATTGAAGACGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATACGCTGGGGAGAAAGAAGAGCACAGGTTGATGTATGGATGCTTAAGAGGAGGATAACCATAGACTGCTGGATACACTGGGAGGAGGAGGAGGAGGAAGTTGACCATGGATAGATAAATGGATGGGTATATTGGAGAGAAAGAAAAGCACGGCTGGGTGGCTGCATGCTACGGGGTAGGATGGCCATTGTTGGGTGGCTACACTGGGAAAAAGAAGAGCACAGATGAATGAATGGCCGAGTAGATGAATGAATGGAAATGTTGGAGGTTGAAGATGGAGGGATGGAGAGGCGGGGGGAATAGATGGATACACAGGGGAGAAAGAAGAGCACAGATGGATGCTTCAAAGGAGGATGACCATGGATGGATGGATAGATACTTTCGGGAGAAGGAAGAGCACGTACGGATGCTTGAGAGAAGGGCGGGTGGGCAGCAGGCAGACCCCTGCTGCTGTTACATGGGGCAGAGCAACACGTGCAGGAGGGAGATGGGGCCCGGGGACGTGTGTGTGATCTGACTGCCGCGTCCTGCTCCTGCAG
Seq C2 exon
CCAACAAGAACACGGTGGAGGCCGTGCAGTACGGGGTGGAGGGCAGCACCGCCTTCCTCGAGTGCCAGCCCCGCTCTCCACAAGCCACCGTCAAATGGCTGCTGCAGAAGGACAACAGCGACCGACGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013370:ENSGALT00000035766:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(36.8=87.5),PF0768612=V-set=PU(0.1=0.0)
A:
NA
C2:
PF0768612=V-set=PU(47.3=97.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]