GgaINT1027094 @ galGal4
Intron Retention
Gene
ENSGALG00000013370 | Sema3F
Description
semaphorin-3F precursor [Source:RefSeq peptide;Acc:NP_989589]
Coordinates
chr12:3181974-3183130:+
Coord C1 exon
chr12:3181974-3182093
Coord A exon
chr12:3182094-3182990
Coord C2 exon
chr12:3182991-3183130
Length
897 bp
Sequences
Splice sites
5' ss Seq
ACGGTTGGT
5' ss Score
6.35
3' ss Seq
ACTGCGTCGTGCCCTTGCAGACC
3' ss Score
10.39
Exon sequences
Seq C1 exon
ATGAAGAACTCTATGCTGGGGTCTACATCGACTTCATGGGCACTGATGCAGCCATCTTCCGCACTATGGGCAAGCAGACAGCCATGAGGACAGACCAGTACAATTCACGCTGGCTCAACG
Seq A exon
GTTGGTATGGGGTGTCATCTGCCCAGGTGCCCTGGGGATCCCATGGCTCTGACCATAGGGATGGGGTAGATGGCATTCTGCTTCGTCCTGCCCACAGAGGCGGCAGCCAGGGGCAGGTGCATGGATGGTGGAGTGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGAGAGTGGGAGAGTGGGAGAGTGGTTGGATGAATGGATGGATGGATGGGTGGATGGACAGATGACAAATGAATGGATTGACGGATGATATATAGATGGATGGGCAAATGAATGAGTGACAGGTGGGTGGAGAGATAAAGGATGAATGGGTGGGTGAGTGAGTGGACGGATGGATGGATGATGGATAGTTAGGTGGAGGGAGAGAGGAAGGAAGGGATGAAGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGAATGGATGGATGGATGGATGGAAATCTGGAGCAGATGGACAGAGGGATACCTCTTTGGGGCATGGTGATAGACATGCTTGGGGCTTTGCAGAGTGGTGGGAGCACCCAGCTGGTGAGAGGCAGTGCTGCCTCTGCCAGAGCCTGTGTAAGGGGTTTTCAGAGAGCTGAGTGTTCAACCATGTCCCCGTAGTCAGTGACCCTGAGCGCTCTTCCTGCCCCCATAGAGCACCCCCGGCCCCAGAGCTGCAGCTGAATAAACAGAGCAGAGCAGATGGGGTGGTCCTGCTGGGCGAGAGGGCTGCCGGGGCAGGGATCGAGGAGGGGGAGCTGTCAGCACTGGCTGGGCACAGGCTGATGGATGGCGAGGGGAAGCCGTCGCACCGGTGGCTTTGCAGCAGCGGGGGCTGTGGGTGTTCCCAGGCTGACAGCACTGCGTCGTGCCCTTGCAG
Seq C2 exon
ACCCTGCCTTCGTCCGTGCCCAGCTCATCCCTGACAGCAGCGAGAGGAATGATGACAAACTCTACTTCTTCTTCCGGGAGAAGTCGGCGGATGCCCCGCTCAGCCCCGGGGTCTATTCCCGCATCGGGCGCATCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013370:ENSGALT00000035766:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(9.0=100)
A:
NA
C2:
PF0140314=Sema=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAACTCTATGCTGGGGTCT
R:
AGGCAGATGCGCCCGATG
Band lengths:
258-1155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]