GgaINT1029668 @ galGal4
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22037336-22037697:-
Coord C1 exon
chr7:22037624-22037697
Coord A exon
chr7:22037533-22037623
Coord C2 exon
chr7:22037336-22037532
Length
91 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGG
5' ss Score
6.76
3' ss Seq
GCGGGTTCCTCATCCTGCAGACA
3' ss Score
7.53
Exon sequences
Seq C1 exon
AACATGGAGATGGTGCCAGTGCCCACTACCTCTATGGCAACTTCTACGAGGGGGACTGCTACGTGCTGCTGTCG
Seq A exon
GTAGGGTGGCGCAGGGACTTGGGGTGCTGTGGGGTGCCCCAGACATGGGGACACAGGGTGCATGGCTCCTAGCGGGTTCCTCATCCTGCAG
Seq C2 exon
ACACGTAAGACTGGGAGCGGCTTCAGCTACAACATCCACTACTGGCTGGGTAAGAACTCGAGCCAGGACGAGCAGGGGGCGGCCGCCATCTACACCACGCAGATGGATGAGTATCTGGGCTCTGTGGCCGTGCAGCACCGTGAGGTCCAGGGCCATGAGAGCGAGACATTCCGTGCATACTTCAAGCAGGGACTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(21.3=64.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(68.7=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCACTACCTCTATGGCAA
R:
GCCACAGAGCCCAGATACTCA
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]