DreINT0036231 @ danRer10
Intron Retention
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:217247-217624:-
Coord C1 exon
chr11:217550-217624
Coord A exon
chr11:217444-217549
Coord C2 exon
chr11:217247-217443
Length
106 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
CTCCTGCCTTCCGCTTGCAGACA
3' ss Score
11.78
Exon sequences
Seq C1 exon
AAGATGGATCTGGTTTTGATCCCAGAAAAGTTTCATGGACAGTTTTTTGATGGAGACTGCTACCTGTTGCTCTCA
Seq A exon
GTAAGTTCTACTTCTGAAACCTTAGACATATTGTGGATGCATTATAATAATCCCTGTACAACATCATAAATGCATGTGTTCTTCCTCTCCTGCCTTCCGCTTGCAG
Seq C2 exon
ACATGCAAATCTGGCAAAACGATATCTTATGACATCCATTACTGGATCGGCTCTGCATCGTCAATAGATGAGCAGGGCGCCGCAGCGATGTACGCCGTCCAGCTGGACGAGTTCCTGGGCTCCACACCGGTGCAGCACCGCGAGGTCCAGCAGCACGAGTCCAGCATGTTCTGCGGATACTTCAAACAGGGCATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342:ENSDART00000104546:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(28.9=96.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(68.7=86.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGAAAAGTTTCATGGACAGT
R:
GCCCTGTTTGAAGTATCCGCA
Band lengths:
248-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]