BtaINT0024431 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55987423-55988435:+
Coord C1 exon
chr5:55987423-55987497
Coord A exon
chr5:55987498-55988238
Coord C2 exon
chr5:55988239-55988435
Length
741 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
TCTCTTTGACTACACCCCAGACC
3' ss Score
3.77
Exon sequences
Seq C1 exon
AAAATGGAGCTGGCGCTGGTGCCTCTGAGCGCCCACGGCAACTTCTATGAGGGAGACTGCTACGTCATCCTCTCG
Seq A exon
GTGAGCACCGTCCGCCCTCTCCCCTGATTCTCACAAGCTCCTCCCCAGAGAGCCAGCTCCGGGGCTTCCCTGGGAGATTTGCCCACAAAATTAATCAGGCCTCTGGTATCCGTCTTGATTCTTCCTCGCTGTTGCATGGAACAGGCTTCCAGTTTGACTATCAAAGGCTGTGCTTAGGCCAGGGTTTTAAATTTTGCATCTGAATGGGGGAGAGGTGTGGCCGTCAGTCTGAACATCAGCATGTGGCCCATAGCCAGGCTTCAGCCTCCTGAGCCCAGACCCCAGATTACAGTGCTGTGGAGGAAGGCCAGGTGGACACAGGGCCGTCTCTGGCCTCAAAGTGCTCACCTAGCCGAGGGAACAGTCTCCCACATGGACGGTGCCGACAGAGCCACGCTGGGAGACAGCAGCTCTATACAGCTGTGAGGGTGCAGGGGTGCAAATGAGCAACAAGAGAACTCTTGCCTGCATTCCAACCTGGCAAGATTTCCCCCTACCTCTGCTTATGTGGAGGACAGTAAGCTGTCAGCATTCCCCAAATGTAGGGAGGGACTCAGGCTGGTAGGGCTTGAGTCACGGAACAGGTCTGCCCAGGGGCCACTGTAGGGGGCAAGAGACTGCAGAGCAGGACACAGAGGCCTGAGCCTGCCGAGAATGGGACACAAGCCACCCTAGGCAGCTACCTTCCCAGGCCAGAGGGGCGAACCAGCCCTTGAGCCAATCTCTTTGACTACACCCCAG
Seq C2 exon
ACCCGGAGAGTGGGCTGCCTCCTCTCCCAAGACATCCACTTCTGGATTGGGAAGGACTCCTCCCAGGATGAACAGAGCTGCGCAGCCATCTACACTACGCAGCTGGACGACTACTTGGGGGGCAGCCCCGTTCAGCACCGGGAGGTCCAGTACCACGAGTCCGACACCTTCCGTGGCTACTTCAAGCAGGGCATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913:ENSBTAT00000022497:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(28.9=96.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(68.7=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGGCAACTTCTATGAGGG
R:
TGATGCCCTGCTTGAAGTAGC
Band lengths:
239-980
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]