GgaINT0102126 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:4504483-4506349:+
Coord C1 exon
chr2:4504483-4504557
Coord A exon
chr2:4504558-4506152
Coord C2 exon
chr2:4506153-4506349
Length
1595 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
ATCTTTTCCACTTCTTCCAGAGC
3' ss Score
8.93
Exon sequences
Seq C1 exon
AACATGAAGATGGTTCCTGTACCTGAAAAAGCCTATGGGACTTTTTTTGAAGGGGACTGCTATGTAATTCTGCAC
Seq A exon
GTAAGTAAGGTGAACACAAACATTGGTCTCTTTGCAAGGATCAGCATCGTTTCTTGGGTTCCAACTTGATACTGGAGTGGTTGTGCACGTGCATTTGCCATCCAATCACACACCTGAATATAGTGTGGCTGTTGTAATGGCTCTGTGTGTCCAGTAAATCAGAAGTCCTGAGGAACCATTAGCAGTAACTCATTAAAATGATTTATCTTCTCACCCATTGATTTATGTCCAGATGTGGAAAAATGGCTGATATGTCCCCCAGAGTTAAGGCCGTTAAGGCCTGGATTTGCATGGCTTCTGGGAGTGTTTTTGGGATGGGAGAGGTGGCCAACTAGGAAATGTTATTTGCACAAGATGGTCACACCAACAGTGGAGAAGCTCTGCGGCCCTTCTCCCTCTCTCCCTTGGGAGACCTCTGCTGTCCCACCCAAATGTGGTCCAGACTTAATTGCAACCATTTGAACTCGGGCTAGGCAGAAGCACAGGTAAGTCCACCATGCACAGCCCATTATGGTATCTTCTGAGTGTTTTTGGAGAATCAGTTTGGCAGCAGCCACCCAAAGATGTGCTTAGAGCAGAATGTGAGTGTCCTTGCAGAGAGCTGGCTATAATCACTGTAGGTTTTGATGCTCACAGGCTCAGCTTATGTTGCAAGAGCTTCCCCAGGTAACAAAACCCTTAGTCAGTCTGCTGCTCTCCTTCCTCTCTGCAGATAAGTGGGTAAAAATATTCATCTTTGCATTCTGCACCTTAACTGGATGCTTTTCAAACAAAGCTTGTCGGCAGGACAATAGGACTTTGATCATCTTCAGTAACAGTGCATTAAATTGAACAATTTTGCCACAAATTAGTCAGCTGCGCCTAGAGGAATGGTGTTTTATTCAAGCTCTACTGTGTTTTTCGCTGTAGTATCACTGCACAAAGCAAATAAACAGAACTTAGTGTCAAATCGAGTTTATAAAATGAGCTTTTATTATCTTTTCCAGGCATGGATGATAGGACTTTAACACAGTAGGTGCTGAAAAATAACTGGCACGACTCACATAACGATAAGCACACCTGTTCTCAGATCACTTGCCTCTTCTTTCTGGGCTATTGGGTTTTTCTGTAATAAGATGAATCACAGCACGCACACGCGGGCTCAGCTTCATTTGGAGTTGTGTCTCTTTTGCAAGTCAGCAGGAACTCCCAGGCAGTTGGTGTTACTATGTGGTGTCATATGAGAAAGAGAAAGGGAGAGAAAGAATCTGATCTCCAGGCAAATAAGAGAGTATCTGGTACGTTTTTTTAAAGTGATCTATGAGAAGAATGTCCTTTAAGTTTTCATATCAAACTCTGCAAAAGTAGGACAGGTCAAACACATGAGGCTTTGGACTTCCACAGGTGCCTCGTTTTCCTTGATAACATGAGTCGTAAAAGCATATATAGTGGAAGCATGCTTCAGTGGAGCATCATTGGGCTCCATCCTATGGAGAGGGAGAAGGGGATGGGCCTTGGTAATGGGCTCCATGGTTACTTGTTTTGGCCAGTTCTCCCTGGACAGCAGCATTATGGCCTGTGTCTTCAACCTGTCTCATCTTTTCCACTTCTTCCAG
Seq C2 exon
AGCAAAAGAACCTCTCGTGGCACCGCTGTGGATTTGCATTACTGGATTGGGAAGGATTCATCCCAAGATGAGCAAGGTGCCGCGGCCATGTACGTCACCCAGCTGGACGCTGCGCTCAGGGGAAGCCCCGTGCAGCACCGGGAGGTGCAGGGACATGAGTCTGAGACCTTCCAAAGCTATTTCCGCAACGGCATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763:ENSGALT00000009258:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.106
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(28.9=96.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(68.7=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGAAGATGGTTCCTGTACCTG
R:
CGTTGCGGAAATAGCTTTGGA
Band lengths:
264-1859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]