MmuINT0172948 @ mm9
Intron Retention
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:118967123-118967634:+
Coord C1 exon
chr9:118967123-118967197
Coord A exon
chr9:118967198-118967428
Coord C2 exon
chr9:118967429-118967634
Length
231 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TACAAATGCCTGGACCCTAGGTC
3' ss Score
5.48
Exon sequences
Seq C1 exon
AACCTAAAGATGCTGCCATTGCCTGAAAGGGCTCATGGGAATTTCTTTGAAGAATGCTGCTATGTCGTCCTTCAT
Seq A exon
GTGAGTCACCTGGGGAGTCTTTCTTAGAGGCGATATGGTCCAGAGCTGAAGAAACCCAGGCCTAGAAATAAACTCTATCCTGAGGAGATCAAAAGCCCCCACATCACATACCACCCACAAGGGGCTGCTGCTCTGAGGCCTTCCAGTCCCCAGTTCCCCTCATAGCCTTCATCCAAGTGCCTTCCCGTGGGTCCCCTTCCCTCTCCATATCTACAAATGCCTGGACCCTAG
Seq C2 exon
GTCCCTCAGAGTCCAAAAGCTACCCAGGGAGGATTCAGTGACCTGCACTACTGGATTGGAAAGGATGCCAGCGCAGAAGCCCGGGAGGCTGCGGTCTCCTTTGTGCAATGTCTGCAGGAGGACCTAGGAGACCAGACTGTGCTGCACCGAGAGTCACAGGGCCACGAGTCCGACTGCTTCCACAGCTATTTCCACCCTGGAGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775-Vill:NM_011700:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(27.9=96.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(69.8=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTAAAGATGCTGCCATTGC
R:
TCCAGGGTGGAAATAGCTGTG
Band lengths:
276-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: