DreINT0022383 @ danRer10
Intron Retention
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20295143-20296347:-
Coord C1 exon
chr24:20296273-20296347
Coord A exon
chr24:20295337-20296272
Coord C2 exon
chr24:20295143-20295336
Length
936 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TTTTTCCATGTGTCACTCAGGTG
3' ss Score
7.53
Exon sequences
Seq C1 exon
AAAATGCAGATGGTCGCTGTTCCAGAGCAAGCATTTGGGAATTTTTTTGAGGGCGATTGCTACATCATACTTAAT
Seq A exon
GTAAGTCATCTGCAATTCAGTTTAATTCACAACTTATTTTTAAAAGTGCTTTTGGAAAAGACGATGCTTTTGAACATCTTCATTTAGCAATATTTTATGAAGTTTATTTATAAACTAATTTTGAGAAGATCACATGCTTATGATTGACCACGGCTGGTCCTGCATTACCTAACACGTGATGTACCAATCAAATGATTCCTAACTCACTACAAAAAAACTGTGTTTCTTACCTTAGTTATCCTCGTCTTGAAGAATCCCCCCTTCCACCCCTACTCCTCCATATTTTCCTTGATCAGGCAGCACGCCGGCCCAGCGGTTAGCATTGTTGCCTCACAGCAAGAATGTCACTGGTTCAAGTCATTACCAGGCCAGTCAACGTTTCTGTGAGGAGATAAACATGTTCTCCCCATGCTCGCGTGGGATCCCCGCAGGTTCTACAGTTTCCTTCCACAGTCCAAGGACATGAAACATGAATTGACCAAAGCAAATTGGCACCATAGATTAGCTCTTAATCAGTAGTATATCTCTCCATAGCAATCTCTAATTTGTCATTACCCATAAATGAGCAGGGGAGTTCTCGAGACCTACCTGAGCTCAAACTCCCCTCTCGCCCTGTAAACAGTAGGGAGCCCCGGGCTCGAGGATCTTAGGAGTTATCACACTGTTGTGATAAAGGTTGTGAGTTCATTCAATTGTGACTGTTTCTTAAAATTTTGATTTAAATCTTGCAATTTAAAGTTTATTTTCCATCACAGTATAACTTTTATTTCATGTCTTGAACATTTGACTGTATTTTTGACAATTTTGTGATTAAATATAATAATAATAACTTCTTTATTTTATTTCATTATTTCAAATAAATATATATTTTTTTAAATGTACTTTTTTATATTTACAGTATGTTTGTCCTCATGCATTTTTCCATGTGTCACTCAG
Seq C2 exon
GTGAGCAACAACCCTGCACAATCCATTGACATCCATTACTGGATAGGTAACAGTTCCTCTCAGGATGAGCAGGGAGCAGCAGCCATCTATGTGACCCAGCTGGACGAGAATTTCGGCGGCAGTCCTGTTCAATACCGTGAGGTCCAGGGCCATGAATCTGTGAAATTCAAAAGCTACTTCAAGAATGGCCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909:ENSDART00000048940:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(29.3=96.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(68.3=86.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGTCGCTGTTCCAGAG
R:
TGAGGCCATTCTTGAAGTAGCT
Band lengths:
262-1198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]