RnoINT0024213 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70296100-70297663:+
Coord C1 exon
chr7:70296100-70296174
Coord A exon
chr7:70296175-70297466
Coord C2 exon
chr7:70297467-70297663
Length
1292 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
TCCCTCTGGCTACATCCTAGACC
3' ss Score
4.49
Exon sequences
Seq C1 exon
AAAATGGAGCTGGTGCTGGTGCCCCTGAGTGCTCATGGCAACTTCTATGAGGGAGACTGCTACATCATCCTCTCG
Seq A exon
GTGAGCAATGTCCTCCTCTCAGCAGGTAGTTCCCAAGCTGAAGACAGTTCCGCTGGTGAGAGAAGTGGAGTTCCCAGTGTCTGTGTGTGACAGGCAGTAGGCATGGGGCCCTCAGTCCAAACCCCCTCCTGGGTGTAAGCTACCCTGCATACCGCACGCACACACACACACACACACATACACACACACACACACACACACACACACACACACACACACACACACACACCCCCTAGGTCCCAGCCACACACTCAAGTATTCAGGAAAGCACACAAATATGCAGCCTGACTTTGGCCACAGAGTGTCACTGTGCCTTAGGTGTGATAGTCTCTGTGACTGTGATAAATGCCCTGAGCAAAGCAGGTTGGGACAGAGAGGGTTTATTTCATCTTACAGCTTGTAGACCGCCACTGAGGAGGAGCTCAGGCAGGAAGCTGGAGGCAGGAACTGTAGAGACCACGGGGCAATGCTGCCTACTGGCTTGCTTCTTGTGGCTTTTTACAAAATATACCCAAGGACCACTTGCTCTCCCCCATCAGTCATTGATCAGGAAAAACGCACACAGACATGTCCACAGGCCATCAAATTCTTCCTCCCAGATAACCCCAGCTTGTGACAAGTTGACAGGATAGGCATAGTGTATGCCTGTAGTCATGGCACTCAGCAAGATCACAGCTTCAAGGTTAGCCTGGGCTACATACTAAATCCTTGATTAGCCTGGGCTACGAGCAAACATTCTCGTATGGAGCCTAGTGGCACACACACTTGTGATCCCAGCACTGGAGAGGTGAAACTAGAGAGATTAGGAGTTCGAGGCCTGCCTCAACAAGTTTGACAAGCTTGGGCTATAGAATAACCTGGGTTTTATTGTTGGGGATTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTAAATCAAAGCTTTTGCTCTTTCTACTGGAGGAATAATATCACATGCACAGTGCTAACAGCTATGCAGTTCTGTGAGTGCAGGGGCCCTTCAGAGGGAGCCTGAAATTCGACTGGGAAAAGGTTTCCCACTTTAGGAAAAGCAAGTGGCCAACTTCCACAAGTGTGGGAAGGAAGTAAGGCTGTACAGCTTCAGTGGGCCTGTAAATGGGTCATGCCAACTCCAGTACAGAGAAAGAAGGGCTGCGTATGTATGTGGAGGGGTCTTGCCCTGCAGCCTGTAAGACAGGCATGCTGGGGCCTTCCCACACCAGAGAAGTCAGCAGGACAGCACAGGTGACCTTGCACCTGACCTTGTCCCTCTGGCTACATCCTAG
Seq C2 exon
ACCCGGAGAGTGGGCAGCCTTCTCTCCCAAAACATCCACTTTTGGATCGGGAAGGACTCCTCCCAAGATGAGCAGAGCTGTGCAGCCATCTATACCACACAGCTGGATGACTACCTGGGAGGCAGCCCCGTGCAGCACCGTGAGGTCCAGTACCATGAGTCTGACACCTTCCGTGGCTACTTCAAGCGGGGCATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(28.9=96.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(68.7=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCCTGAGTGCTCATG
R:
ATGATGCCCCGCTTGAAGTAG
Band lengths:
254-1546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]