MmuINT0022342 @ mm10
Intron Retention
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:127004697-127006691:+
Coord C1 exon
chr10:127004697-127004771
Coord A exon
chr10:127004772-127006494
Coord C2 exon
chr10:127006495-127006691
Length
1723 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
CCCCTCTGGCTACATCCCAGACC
3' ss Score
4.11
Exon sequences
Seq C1 exon
AAAATGGAGCTGGCGCTGGTGCCCCTGAGTGCTCACGGCAACTTCTACGAGGGAGACTGCTACATCGTCCTCTCG
Seq A exon
GTGAGCGATGTCCTCCACAGCTGTGTTCTCCCTCAGCTCCCAGGCTGTAGACAGCTCCCACGGTGAAAGTGGTGGGGTTTGCATTGTCTGTGTAGACTCTTCCTCATATGGTTGGACAAGGGCCACCATCAGGCCTGGGTTGTGATTGTGTGTGTGTCAGATGGTGGGCCTAGGGCCCTCAGTCCAACCCTTCTCCTGGGTGTAAGCTGTCCACACACCCACACACATACCATACACACACAGCACACACACCCCAGGGTCCCAGCCATACACTAAAGTGTTCAGAAGGCCAGACAAACATGCAACCTGACTTTGGCCACAAAGTGCTCACGGTGCCTTAGGTATGATAGTTTCTATTGCTGTGACAAATGCCCTGAGCAAAAGCATCTTGGGATTCATTCATCTTATGTCGCTGAGGAAAGTCAGGCCAGGAGCTCAAGGCAGAAACCTGGAGGCAGAAACTGAAGCAGAGCCCACAGAGCAATGCTGCTTACTGGCTTGCTTCCTGTGGTTCCCCCCCACCCTCCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAGTGTGTAGACCAGGCTGGCCTTGAACTCAGAAATCACCCTCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTGCCTCTTTGCCTCTCTGCCTCTCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCAAGTGCTGGGATTAAAGGCGTGAGCCACCACTGCCCGGCTCTTGTGGCTTTTTAAAATGTACCCGAGGACCACCTGCCCATCCGTCGTGGATCAGGAAAACGCACTACAAACGTACCCCCGGGCCATCTGATGGAGGCATTTTTTTTTTCTTAATCCACGTTCTTCCTCCCAGATAACTCCAGCTTGTGACAAGTTGACAGGATAGACAGTATACCAGTCATAACACTCAGGAAGACCAACTTCAAGGTCAGCCTGGGCTACATATTAAATCCTTGACTAGCCTGGGCTACAGGCAAACATTCAGTCTCCTAAAACCAAAGAATGGAACCTAGTGGCACACACCTATGATCCCAGCACTTGAGAGTTGGAACTAGGGAGATTAGGAGGTTGGAGGCCTGCCTCAACAAGTTTTGACTAGCTTGGGCTATGCAATAACCTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTAAAAATAACCTTTTGCTTGTTCTACTGGATGAATACTATCACGCGGACAGTGCTGAAAAATGTGCAGTTCTGTGAGCGCGGGGGCCCTTCATACAGAGCCTGAAATCCAACTGGGGAAAGGTTCCCCACTTTAGGAACAGCAAGTGGTCAGCTTCCCCAAATGTGGGAAAGAAACGGGGCTATCAGAGCTTCAGCACGCCTGTAAACAGGCAGTGCTGGAGCACAGAGAAAGAAGGGCTGCATGTGTGAAGGGGCCTTGCCCTGAAGCCCCGTAGCACAGGGCATGCTGGCGCCTTCCCACACCAGAGAAGTCAGCAGGATAGCAGAGGTGAGCCTAGACCTGACCCTGCCCCTCTGGCTACATCCCAG
Seq C2 exon
ACCCGGAGAGTGGGCAGCCTTCTCTCCCAGAACATCCACTTTTGGATCGGGAAGGACTCCTCCCAGGACGAGCAGAGCTGCGCGGCCATCTATACCACACAGCTGGATGACTACCTGGGAGGCAGCCCGGTGCAGCACCGTGAGGTCCAGTACCACGAGTCCGACACCTTCCGTGGCTACTTCAAGCAGGGCATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432:ENSMUST00000026500:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(28.9=96.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(68.7=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCCCCTGAGTGCTC
R:
TGATGCCCTGCTTGAAGTAGC
Band lengths:
256-1979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types