BtaINT0159768 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11481100-11481697:+
Coord C1 exon
chr22:11481100-11481174
Coord A exon
chr22:11481175-11481491
Coord C2 exon
chr22:11481492-11481697
Length
317 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGC
5' ss Score
5.62
3' ss Seq
CACAAACTCTTGGGCCCTAGGTC
3' ss Score
6.94
Exon sequences
Seq C1 exon
AACCTGCAGATGGTGCCGGTCCCCGAGCCGGCTTACGGGAACTTCTTCGAGAAGCACTGCTATGTCGTTCTGCAC
Seq A exon
GTGAGCACTTGAGGAGCCTTTTGGGGGACTGGGCGGGGGGAGGGGCACAGCCCACTGGGGGCTCTGATGATGCAGATTAAGCTCCACCCTGGGAAGAGGCAGGCTGGGAGCCCAAGAATCGCATCCCACAAGGAGGCTGCTGCTGCCCTTGAGGCTTTTTTACCCTCCCCTCCGCATTCTCCCTCTCTTAGCTGCGGAAGCACCTGACCAGTCTCCCCAAAGCCCTTGCTACCTCCTCCACCTTGGGCCCCAGCCCACCCCACCCACCCCTGGGACCCCAGCCCCCTACCACACACACACAAACTCTTGGGCCCTAG
Seq C2 exon
GTCCCCCAGAGCCTGAAGGCCACACCGGGCGTGCCCAAAGACCTGCACTACTGGGTCGGCAAGATGGCGGCACCGGGGGCGCAGGGCGCGCCGGGCTCCTTCCTGCAGCATCTGAAGGAGGCGCTGGGCGGCGCCACCGTGCAGCACCGCGAGGTGCAAGGCCACGAGTCCGCTTGTTTTCGAAGCTACTTCCGCTCGGGAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963:ENSBTAT00000017231:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(27.9=96.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(69.8=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGTGCCGGTCCCC
R:
TCCCGAGCGGAAGTAGCTTC
Band lengths:
270-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]