RnoINT0162883 @ rn6
Intron Retention
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127739931-127740487:+
Coord C1 exon
chr8:127739931-127740005
Coord A exon
chr8:127740006-127740290
Coord C2 exon
chr8:127740291-127740487
Length
285 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CCTGGACCCTTGTCCCTCAGAGT
3' ss Score
6.8
Exon sequences
Seq C1 exon
AACCTAAAGATGCTGCCACTGCCTGAAAAGGCTCATGGGAATTTCTTCGAGGAATGCTGCTATGTTGTCCTCCAC
Seq A exon
GTGAGTCACCTGGGGAGTCTTTCTTAGGGGCAATGATATGGCCCAGAGTTGAAGAAACCCAGGCCTAGAAATAAACTCTATCCTGAGGAGAGCAAAAAACCCCACAATCACATGCCACCCACAAGGGGCTGCTGCCCTGAGGCCTTCCAGTGCCCAGTTCCCCTCATAGCCTCCCACTGGCTCCTTGTACCTTGATCACTCCCTCTACCTCACTGCCCATCCAGGCCTTAGAGCCTGGCCCCTTCCCCCTCCACATCTACAAATGCCTGGACCCTTGTCCCTCAG
Seq C2 exon
AGTCCAAAGGCTACCCAGGGAGGATCCCGTGACCTGCACTGCTGGATTGGAAAGGAGGCCAGCACAGAGGCCCAGGAGGCTGCAGTCTCCTTTATGCACCGTCTGCAGCAGGACCTAGGAGACCAGACGGTGCTGCACCGAGAGTCACAGGGCCACGAGTCCGACTGCTTCCACAGCTATTTCCGCCCGGGAGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446:ENSRNOT00000015888:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(28.9=96.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(68.7=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTAAAGATGCTGCCACTGC
R:
ATGACTCCCGGGCGGAAATAG
Band lengths:
271-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]