HsaINT0180208 @ hg38
Intron Retention
Gene
ENSG00000136059 | VILL
Description
villin like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr3:37993898-37994466:+
Coord C1 exon
chr3:37993898-37993972
Coord A exon
chr3:37993973-37994260
Coord C2 exon
chr3:37994261-37994466
Length
288 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CACAAACACCCGGACCCTAGGTC
3' ss Score
4.2
Exon sequences
Seq C1 exon
AACCGGAAGATGGTGCCGGTACCCGAGGGGGCTTACGGGAACTTTTTTGAGGAACACTGCTATGTCATCCTCCAC
Seq A exon
GTGAGTCGCTTGGGGAAGTCTGCCTGAGAGGGGTGGCATGGCCCGGCACTGGGGAGACTGAGGCACAGGCATAAACTCTGCCCTGGGAAGCGGCAAGTTGAGAGCCGGAGAATCACATCCCACAAGGGGGCGGTTACCGTTGAGGCTTCTTAGTCCTTCCCTCCCACTTCCTGATCTCCGCGGAAGCCCCTGCCTAGCGTCTCCCCATGGCCCTTGGTACATCCTCCCCTTCTCCACCCGCACCTCCGTCTTCCCCGCAACACATATACACAAACACCCGGACCCTAG
Seq C2 exon
GTCCCCCAGAGCCCGAAGGCCACGCAGGGGGCGTCCAGCGACCTGCACTACTGGGTCGGGAAGCAGGCGGGTGCGGAAGCGCAGGGCGCTGCGGAGGCCTTCCAGCAGCGCCTACAGGACGAGCTGGGGGGCCAGACCGTGCTGCACCGCGAGGCGCAGGGCCACGAGTCCGACTGCTTCTGCAGCTACTTCCGCCCGGGAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059:ENST00000283713:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(27.9=96.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(69.8=87.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGGAAGATGGTGCCGG
R:
TCCCGGGCGGAAGTAGCT
Band lengths:
276-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains