HsaINT0180191 @ hg38
Intron Retention
Gene
ENSG00000127831 | VIL1
Description
villin 1 [Source:HGNC Symbol;Acc:HGNC:12690]
Coordinates
chr2:218424277-218425811:+
Coord C1 exon
chr2:218424277-218424351
Coord A exon
chr2:218424352-218425614
Coord C2 exon
chr2:218425615-218425811
Length
1263 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
ACTGGACACCTTTTCCCTAGATC
3' ss Score
6.96
Exon sequences
Seq C1 exon
GCCATGCAGATGGTGCCTGTTCCTTCCAGCACCTTTGGAAGCTTCTTCGATGGTGACTGCTACATCATCCTGGCT
Seq A exon
GTGAGTCAGGGGCAGGGGAGGGGGCTGAGCAGAGAGCAAAACCCACTGTGGTGTCAGGGAGGAAACAGGCTGGGGGCCGTGGGGAGAGTTGGCCTGGCTTCACCCCAAGACACAATTTACTGGGTATGCCCAAGTGCCCAACCCTGTGGGGGCTTCACAGAGGTCAGAGGCTCTTGCTGCCCTTGATCCACTGAGCTCCCAGCTGAGGTCAACTTCTGTGGATTCACAGTCTTGGGGAAACTTCTGAGTTGTTGCCGTATCACCCTAACTTGAGTCCACATTTCCACAATCCATAGTCATCTTCTTTTTTTAAAATTTTTTTCCGGATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGAGCGACCTCGGCTCACTGCAACCTCCACTTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCTTGAGTAGCTTGGACTACAGGCACGTGCCACCACAGTCAGCTAATTTTTTTGTATTTTTTAGTAGAAACGGGGTTTCACCATGTTGATCAGGCTGGTTTCGAACTCTTGACCTCAGGTGATCCACTCGCCTCAGCCTCCCAAAATGCTGGGATTACAGGCATGAGCCACCATGCCCAGCCTGGCAGTCATCTTCATATCACCTTGATTTTCACCATACCCTGGTACCACCTGTACTATTAAGACATTTGTATTTTTTTCTTTATATTGACTCATTTTAAATTTTTATTTTATTTTATGTATTTATTATTATTATTTTTTGAGACAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACTGCAAACTCTGCCTCCTGGATTCAAGCGATTCTCGTGGCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATCTGCCCCCACACCTGGCTAATTTTTGTATTTTTAGTAAAGACAGGGTTTTGCCATGTTGGCCAGGCTGGTCTTCAACTCCTGACCTCAGGTGATCCACTTGCCTCGACCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCTGGCACAAGCAAGTTATTTCTGAGATGAGGCAAGGGAGGCCCAGAGAGGAGAAGCCATGTCTCAGAGAGTCAATGGTAGAGCTGGGCCATGACTCAGGGCTCCTAACCGCCAGCCTAGTGCACTTGCCCTGTGCCACGCTCCCCCATAGTCCTGGACGGCACGTGTGTGGGAGGTCACACAGAGCTGGAGGGGCTGTGGGAGCCCAGGGTCTCGGGTACACTGGACACCTTTTCCCTAG
Seq C2 exon
ATCCACAAGACAGCCAGCAGCCTGTCCTATGACATCCACTACTGGATTGGCCAGGACTCATCCCTGGATGAGCAGGGGGCAGCTGCCATCTACACCACACAGATGGATGACTTCCTGAAGGGCCGGGCTGTGCAGCACCGCGAGGTCCAGGGCAACGAGAGCGAGGCCTTCCGAGGCTACTTCAAGCAAGGCCTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127831:ENST00000248444:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(28.9=96.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(68.7=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTGCCTGTTCCTTCCAG
R:
AAGGCCTTGCTTGAAGTAGCC
Band lengths:
262-1525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains