RnoINT0162864 @ rn6
Intron Retention
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81696427-81698597:+
Coord C1 exon
chr9:81696427-81696501
Coord A exon
chr9:81696502-81698400
Coord C2 exon
chr9:81698401-81698597
Length
1899 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
CAGATGCCTCCCACCCCCAGATC
3' ss Score
8.49
Exon sequences
Seq C1 exon
GCTATGCAGATGGTGCCGGTTCCTTCCAGCACCTTTGGAAGCTTCTTCGATGGTGACTGCTATGTAGTCCTGGCT
Seq A exon
GTAAGTGGGTCAGGCCAGGGCGGGGCTGAAGAGAAAGCAAAGCCTGCTGGGTATTAGGGAGGAAACTAGAGGCTGGGGGCAGTGCTGAGAGGTGGTCTGGCCTCGTCAATCAGTGTTTGCAAGTGTCCAGGCGTCCAGCTGTGGGGCTCCACAGGGCTTAGGAATTTTGTAAAAGTACTTTCTGGGGGTTGGGGATTTAGCTCAGTGGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAGAAAAAAGAAAAAGAAAAGAAAAAAAAAAGTCCTTTCTGGCTCAAGAGCCACAAACTCATTCAGCCTTGGAGCACCTTCTGAGTTGGTATTTATTATTAATAGCAATAACAATAACAACAATAGTATTTTTGGTATGTGTGTATGTATGTGCGCACACGCTGTACTATGGAAACAGTGTGGAGTTCAGAGGACAACTTGGAGGGGGAGATCTTATGCACCTCAGGGACTGAACTCATCATCATTGCTGCGGCAGGCACTCTTACCTACTGAGCCATTTTTCCGGCCCTGCCCCCCACCCTCTGAAACCCACAGTCATCTTCAAATTCCTTCCTGATGCTTACCCACCTACACTACTAAAGACATTTGTGCTCTTGTATCGATTTGCTCCTGACTTGTAAAGGGTTTCAAATCACACTTACTCACTTTGTGACTCTGTGCATGCACGTGTCTGTGCCTGGTTGCACACATGCCTGGGTGCACAGGTAATTTGCAGGAGTCCATTCTCTTTCTCCTATGTGGTTGCAAGCGCTTTTACTCACTGAGTCAGTCCTCTTGCCTACCCTGGTTCTCAATATTGACGATGCACACTTAACAATTAACTACATCCTCACTGAAAGTGAAAAGCCAAGCCCTGTGTCTCAGATTGAAAACAGCAGTGATGTATTTACACAGTAATTGTGTGCATGGCAGGTATTCCTGTGTACAGGGCATCTGTGGATGCAATGCCTCAAAATCAATAACTGCAAATGGGGAAAAATTGCATCGTGGGTGCTGGAGAGATGGCTCCTCAGTTAAGAGTGCATAAGTTCGGTTCCCAGCACAGCACCCATGTAGGTTGGCTCACAACGGCCTGTAATTCCACCTCCAGGGGGATCTGAGATGCCAAATACACACACACACACACACACACACACACACACACACACACACACACACAAGTGCATATATATAATACAGTAATTGACCTGTAGTGAATGGTTAATAGTTTTTTCTTGTCATTATTCCATAAACAGTACATGATAGCATCTATTCTGACTGTCTGCCTTCTCTTACGTAAGACAGATCTGAGATGTAGCTTCAATGGTAGACTGCTGACCTTGCATCCAGGGTACCCTGAGTTCGATCCCTCGCCCTATGAGTGGGTGCATTGGCATACAAACCTGTAATCCCAGCTCCACCGAGGGAACAAAAGAAACCCAGAGGGAAGCCATCCTCCATCCCAGAGTGTCCCTGCCTAATTTGAGCTACATGAGGCCTTTATGTATCAGAAACAAAGTAAGGGGGGAGGGGGTATGGGAGAGGAGGGAAAGGAGGTAACATTTGAGATGTAAATAGAAAAAATATCCAAGAAAAATAAAATTAAAAAATAAAAAATAAAAGAAAACAGTAACAGTATAGCCACCTGATAGCCCACATGCATCAGCCCCCATGAGTTATTTTCAAGATGAGAACAAGGTCCATAGAGGGGAAAAGTCAGCAACTGTTGTTCTCTGTCAGTAGAGTGAGCTGGACCACAGTTCGGGGCTCAGCAGCAGGCCAGAGGCCTTCACCTGGGGCCCAGGGTCCAAGTGTGTGGGAGATCGTGCAGAATAGGACAGGAGACCATGGGAACCCAGGTCTCACTACACAGATGCCTCCCACCCCCAG
Seq C2 exon
ATCCACAAGACCGGCAGCACCCTCTCCTACGATATCCACTACTGGATTGGCCAGGACTCGTCCCAGGATGAGCAGGGGGCAGCTGCCATCTACACAACACAGATGGATGACTACCTGAAGGGCCGGGCTGTCCAGCACCGTGAGGTCCAAGGCCATGAGAGCGACACATTCCGGAGCTACTTCAAGCAAGGCCTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408:ENSRNOT00000021432:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(28.9=96.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(68.7=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGTGCCGGTTCCTTC
R:
GGCCTTGCTTGAAGTAGCTCC
Band lengths:
262-2161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]