GgaINT1031015 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr12:9071310-9071470:+
Coord C1 exon
chr12:9071310-9071345
Coord A exon
chr12:9071346-9071416
Coord C2 exon
chr12:9071417-9071470
Length
71 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TCACTCTCATTCCTTTCCAGGGA
3' ss Score
11.04
Exon sequences
Seq C1 exon
GGCAACCAGGGCATTCCTGGCCTCCGAGGGGATCCT
Seq A exon
GTGAGTACGGCCCCCCTCCTCCTGAGCCTCATGCCCCCAAGGGCCCCCTTCTCACTCTCATTCCTTTCCAG
Seq C2 exon
GGACCACGGGGAACAACGGGGCATCCTGGCCCAAAGGGGGAAAAAGGCGAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811:ENSGALT00000009331:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTCCTGGCCTCCGAG
R:
GCTCGCCTTTTTCCCCCTTT
Band lengths:
79-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]