GgaINT1031322 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chrZ:72467290-72467498:+
Coord C1 exon
chrZ:72467290-72467310
Coord A exon
chrZ:72467311-72467447
Coord C2 exon
chrZ:72467448-72467498
Length
137 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CCAATTTATTTTGTTCATAGACA
3' ss Score
6.14
Exon sequences
Seq C1 exon
ATTCCTTCGTAGCCCTGAATG
Seq A exon
GTAAGAAAGTTCGTAGTTTTACTATTTGCTGACAGCAAATCCATTTTGGAGGAATTACTTTTTACTTAACTTTTAAATATTTTTATATTTTTTGTCTTATTTAATGTTTTTTTTTCCCCAATTTATTTTGTTCATAG
Seq C2 exon
ACATTTCAACTGCTTCACCTGATCATGAAATGTCTTACAACACAGTGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294:ENSGALT00000003608:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]