BtaINT0130915 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020489 | SEMA6A
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:HGNC Symbol;Acc:HGNC:10738]
Coordinates
chr7:38767895-38773352:+
Coord C1 exon
chr7:38767895-38767915
Coord A exon
chr7:38767916-38773196
Coord C2 exon
chr7:38773197-38773352
Length
5281 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TGTGTTTGTGATGAAAACAGGGC
3' ss Score
4.74
Exon sequences
Seq C1 exon
ATTCCTTCGTGGCACTGAATG
Seq A exon
GTAAGGAAGATGTTACTGATAATTTAATAGCAATGGAAATCTATTTGTGAAATCCTATTTCACTAACCCTCTTGAGTATTTCCGAATCTTATGTTTCTTTTTCAATTAACTTTTAAATTCTCATTATTTTTTATAGACATTTCAACTCCTCTACCAGATCATGAAATGTCTTACAACACAGTATATGGTCAGTTTATGGTTTTGCTTTGTTTTCTTATTCTTCGAGCCACTCATCCTGTGGTAGTTTCGAGTTTTCATTCCTAAACATCATGGACCAGATCCTTTGCTACTTCAGGGCCCCAATTCACTAAAATTATTCATAGCTTTCATGATGCTTCAAAAATTTCTCTACATATATGAGACAACTGACGTGTGAGAATGAGTCTTACATTTTTAATCCACATAACATGAAATATGCCAACCTTAGGGAATTTGGTGAATGCATTTAATGAGTTCTTGAGGGAGAAGAAATTGCTTTTGGACATAAGTACATCCAAGATAAAAGAACAGTGCTTATAAGTAATAGGCCACAGCTCCTTACCTGATAGATGGTACCATTCCTCAAAATGCTGACTTTCAGAACAACATCCTCTGCAGGAAAACCCATACAGAATGCAGATACCAAGTTCTTAACAGGCAAAACTTTACAATATAGCCATCAAAATTTAATCATACATGGAGTATGAATTTGTAGACCTATCATCAGTGATTATTTCTTTAAATGTATATAAGGAAGAGTTACGCAGTCGAAATGATGTGCAAACAGGATCTATCCCATTGTTCCTCCTCTGAAATACAGACAGTACACTAAATAAAGCCCGTAAGTCCATAAACAGATATTCTGAGCTCTTTATAAGGAAAGTTAATATGTAGTTGAAATGTTCCAGTTCCTTTTCTCAAAGCTGCCCCAAATGTTTATTAAGGTAAACTATTCATGTGGGGTTTTTTTTAAAGATAATGAACAGCACATATGTAATGGCAAATTTAAACTTCTGTATTATAACGGGGACTACAAATTTCATTGATATGCAGACATTTTATCAGTTTTATGTTTTGAAATACGTAACAGTAACAGCTCCAGGTCAGTCTTTCAATGTCGAGGTAGGTAACAGAGGAAGAGAACAAAAGAAAGGAAAGAAAAAAGAGGGGGGGAAAAGAAAGCAAGGTAGATTTAGGATTCAGAAAAACAGCTCCTAATGGCTACAAATGTGTTTAACAGCTCTGTGGAAACTGTCATTCCTGTGTCTAACTAGCATCAATAAAACACCTCTTTGAAAGTCGTAAAGTTTATCTTATAAATGGCGGCTGTACAGATACAGAAAACAACACCCAGTCTCTCCTGTCATGAAGTGAGGCAGTGTGGAGTCAGTGAGCCCACTGAATTCATCCACCTTTAACCTTCTCTCATCTCCGATTCAAGCCGGAATACTGAACCCCAGCAACTGGGAGAAACATTCCTCAGGAGGCGAGTGTCATGTAGCTCAGTGTGCCCTTCATAAAGAGAACCCAGTTAGCATCTGCTCTTTTCAATATCATACTTTGCAATCATTTCCTGTAATTGAATAATATTTATCAGATATTGAGAAATTCAGGTCTTAAATCTACTTGAACCAGCAGCCTCCCCAGCATTCATCAGTCGGACTAAGGCCAACTTTAACTCCCAGGTAGTTTCTCATATAGATAGAATAATTAAAGCATGGGATGCTCTTGATGAATAAAAAGTACTCTTCGATTTATGGACCCCTCTTCCTGCCTTTACAAAAGGAAAGGAACTTATTAATTCCTCCACATTAACACTTTAAAGGACAATCCCCATTCGCTCCATCAGTGATTTCTGTGATGACACTAAGAAGAGTTGGAATTTTCCTTTCAGCTAATAATTCTGTTCATTTCAGGCCCAGTCTCTCCAGTGTAAAGTGGTCAGATGATTAACTGACCATCAAAATGAGGGCTGGTTCAGTCAGTACTTACAAAAGCACAGGAGACTTTCTTTACACCAACTACTGCAAAAGATGCTTATTTTGGAGCTAATAAACCTAGAAGAGATTTAATTCATTCATTTGCAGATAGCTGCATGGGGCCTACTATGTGCCAGGCACTGGACTAGCTACTCTTTTTGTACCATCAAAAAAAACCCAAATAGCTGTTTTCATGAGCCCAGATATAAACAAGGAAGCCAACCCCAAAGTCCAAAGTGCACCCACTGTGTCTAGCCATGTCCTTTACATGTCCCATAACACTGAAGCTCCGTGGCTGAGTACAGACTCATAGAGTGACCCACAGAACAAGAACTGCCTAACTCTGAAAAAAAGAATCATTCAATAACCCATGCAAACTCTGCATGGTAGAAGCTCTCTGCAATACCAAGTACATATACAAGAACCCCTTTTTAGTGAATTGGACCCTGATTGTCTTCCTTCTCTCATCCTCTCTTGTATTGATTTAGTGCCTCCTCTGTGTCTAATTGGCTACCATCACTGTTAATAGGTTAGAGTAGTTTGAAGGGTCTCTAACCTCTGGAATTATTAATACAAAGACTTGTAGATATAGAGAAACAATATGATGCATACTGGAGTTAACTTTTAAAATCTATTTCTTTGTATATTGTAAGAATAATACATAATTAGCTCCACTGATTAAAATTATGACTTTTCGTATTGGATTAACAAGACCAAATTATAGGTTCCAAATTGTTGACCTGTAATACCATATCCACAAATGATTGCCTATTTTTGTTGCATGATTTTGGTTACAGAGTCTCTTAGGGAATGCACAAAAACAATATAGCCCATAGAACCAGACTCTAAGAAGAAACATGAGTGACACCTATTTAACAGCTGGAGAGGTCGTAATAACAAGGTCATAATAATACACTTCTTTGACTTCAAGTGAAGGACGGCTGCTTACGGGTGCTTTCACATGGTAGTTCTAAAATTCCTGAGAATCAGGCACTGCTTTCTCAGACTACCGCTTCCACCAGTGACACACACTGTCTGTCCTCGAGCATACGTTTCAGAGATTACAAGCCTCACGCTGCTCTGTTTTTTCCTTCCATTTGAGTATATACGATGCATGGTTTCTCTAGATTTACATGGAGAAAACGGAGATGTGGTGGGTATTAAACTAACATTTCAGCAATAGGCAGAAGCTGATTTCTCACATTTGCGTGCAACATTTTCCTACCTAACTACCATCTGGTCCACACTAATTTCCTCTCATAGCCATAGCTTTCCGTTACCAATGACTTTTCCATGTATTTGCAGCATATGGTCCAGGAACTCTTTTCTATAGAGAATATGTCCCTTAGGCATATATTTCCCCTAGATTACCGTATTAAGAAATGTTCTCCCTAAACCATACTTATGGCATTACCATAAAATTGCCCCTTGAACACAGTTAAATTGAAAGTGCTCAAAATGCATATCAATTCAGGTAAAAGAAGTTCTTGCTACTTGGAGGAAAGGCTTCAGTTTTCCTCCCCTCTCTTTCTGACTCACTACTAAGCTATTTCTCACTGTTTGGGTGCTGAAGTCTCTCTTAGGTTGACAGCATGTTTCATGAGAGCATGGTTAATTCAACAGCAGAAAATAGAGGCTATATTTTAGACCTCAATATAAGCATAAAGGAAGTAAAAGAAAGTCTGTATTTCCAATTCCAGGTTATTAATTTTCCGACTCATGTTCTCTTATCAGTATTGGGAGATGAAATGTGAAACCCAGAAATGTAAAAAACAAAAAATCTAGATGCAAGCATTCTTGAGTTTTAAATGAACATGTTTTTAGCAGTTGGATATGAAGTAGACTCTTTGTAGCAAAGCAGATATTTGAAGCTGTGTAGAAGCCAAACAAGCCCTACACAGAAAGAGGCCTCTTAAATGTTACCAAAGCTTTGTGGTAACATTTTAAATGTAGAGCTCCCAGGGAAATCCTATAGCTTAGATACCCACTTGGCTTGCTTGCTTTTCCCTGCTTTATTCACACACACACGTTATATATATAACCATGTATGTATATGGTTACATGGTCTGTAATTTACAGTATTAAAGTCTCCTGAAACTCCAACCTGCGATAATAATTGTGAAAAAGAAGAATGCAGTGCATTCACTAGAATCTTTCTTTCTGGTGGCTGGCATTTTATTTATCACATGTGTGGTGATCACAGCCTGAGGATGGAGTCACTTGTGAAATCTGTCCTACTTTCTACCAAAGCCATCAACTACACATTCACAGTAGTTCCCTGATGTCTTTTTAAAAATTGTTCAAGAGGTTGCTTCTACAGGTAAGATGGTTTAATAAGCCAAAGACTCCACTTGAAAATCATAGAGAGGTTATTTTTTATTTCCACCAGAGAGAACGGGTAGTGGGGCTTCTTTAAATCATTGTGACAGTTTAGATCAAAGCGCCAGATGCGATCTGCATTTAACCTTGTGGGATGATGGAAAGGAAGGCTTAGAAATGTATTCACAGGAAATGTCCAATTTCTGCCATAACTCCCAACCTGGCCATCCTTCTTCTGGCATTATCCTGCAGTAGGCGACTCTGGATCTCAGAAAGCTCTCCCTTTCTAGTCTGAATCGTATCAGTCATGGTGGCCTCAAAACCCACCTCTCACCGGTATGAGTCAGGAGACCAAGAAACTTAACTTGGTTTGAGTAAGACACAAAAGGCAAAGCCATAACAAGCAGAACAGTTAAGCCCTGTATTCCAGGCAGGAGGGCTGGAGCAGCTCCCTTTAGAAAGCAGAATGCCTGTGAGGCTGCACTGCAAGCAAATACTAGACACATACTCCATGGGAAAGGCTCGGGGCAGCTGAGTTGTCTGTGACAGGGCACACACTCAGCCACTACCATACACTGGCCCCATCATCATGAATGTTACCCCCAGAGTGGACACATTCTGCCTTAGTGCTGCTATGGGAATACCAAGGGACTCTGATATTTCCTGAGCACCTACCATGTGTCAGACACTGCTAGGTACTTTCAGCATGATGCCACTGTAGCCTCCAAACACTGGAGGCCTCTGTTTTGTGCACAAGGAAAATGAAGGCCCAGGGAGGTTAAGTGATTCCCTCAGCTCACCCAGCCAGCAGCAGAGACAAGACCCTCTAACTGCAAGTTCAAGGGCTCTCCTGCCGAATCCTACCACCAGCCTTATTATGTCTAGGGCAATCCCCTTTGAGTCTTTTACCGCCAGTTCGGGTGTCCCACCTCCTGGCCTCTGAGCAAAGAAAAAGCAGGCGTCTCCGGTGATGTCTTCCCTAACTGTGTTTGTGATGAAAACAG
Seq C2 exon
GGCACTCCAGTTCCCTCCTGCCCAGCACCACCACGTCCGATTCGGCGGCTCAAGAGGGGTATGAGTCTAGGGGAGGAATGATGGACTGGAAGGAGTCACCCGACAGCACAGACTCTTTGGGGGCAGTGTCTTCCCATAATCACCAAGACAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020489:ENSBTAT00000043906:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.745
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(10.4=100)
A:
NA
C2:
PF0143720=PSI=PD(4.5=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]