GgaINT0061035 @ galGal3
Intron Retention
Gene
ENSGALG00000002294 | SEMA6A
Description
NA
Coordinates
chrZ:70749555-70756986:+
Coord C1 exon
chrZ:70749555-70749575
Coord A exon
chrZ:70749576-70756821
Coord C2 exon
chrZ:70756822-70756986
Length
7246 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CTGTATTTATAATGCAACAGGAC
3' ss Score
5.26
Exon sequences
Seq C1 exon
ATTCCTTCGTAGCCCTGAATG
Seq A exon
GTAAGAAAGTTCGTAGTTTTACTATTTGCTGACAGCAAATCCATTTTGGAGGAATTACTTTTTACTTAACTTTTAAATATTTTTATATTTTTTGTCTTATTTAATGTTTTTTTTTCCCCAATTTATTTTGTTCATAGACATTTCAACTGCTTCACCTGATCATGAAATGTCTTACAACACAGTGTATGGTCAGTTTATGGGTGTTTTTTAAAAAGTCTCTCTGGAACCTTGTGTTAACTAGTAGTTCCTCTAGTCAAAGAGCCATTAACCTTTTCTTATTTGTTTTGTCTTGCCTTTGAGGGCCTAATTCACTAATCACAAGTGAAAATAAGTAATGCCTCTTGATTTGCATTCCCTCTTTTCTAGTCCTCTCTCAAAACTGCTTAAGATGGTTTATTTTATTGGTACTCCAGCAGACACGATTAAAAGCTTGTTTCATCTGAATACTCAGACAAAGGAAGACTTGGATACAGTGATGCGTATTATCTGTTCCCTGGGAAAAGCAAGATAGCTTACCTCCCGCTCATGAGATATCCAGGCTGGCATAATGACTGCTCCAGCAGCTAGTCAACGATAGCTTTGGGAAAGGATCAGAACTGTCCCTGGGTGATAGAAAGACCTCTCTTAAGAAGAAGTAATAATTACCCATGTCAGTTGAGATTGGGTTAAACCCTGAGTTACGAAAGTTTCGGTCACTTCTGCAGTGAATCATTTATGTTACCCATTCTTGCAGTATCACAATACTCACATGGTGCCTGGTCTGTAAAAAATGGAATTCACACAACAAATTGGGTGATCAAAGCTGAAAAGAAGCATTTCTGTCAGCCTAGGGTAGCAGTTTTCCTCCAGGCAGCTGTTAATCTGCACTTGCACTGCTTTGCACCGCTTTGTTCTTTGTTTGGAAGTGGATTATATTGGCACTTGGAGTGCAAAGTGTCTTCTGGAGGAATTATTGCAGAATAAATGATGACTTCAAATTCAAACCTAGATTTATATTGCAATAGCTTCTCCTTATTGGCAACCTGAACAACGATGAGCGCCCACAAGGATGTGTGATATTGTTCGCAATGAAGTCAGTGGTGAATTTCCATGTGGGATAAGAACTTACTTGTGAAATTGCTTCCAGGCTATGCAAGACTAAAAGTTCATCAGAACTGAGGCAAAATAACTGTATGTTTAGCTGAACGTAATTAGAGGTAGGCTAGTTTGAAGTTGTGAAGATGCTCATCAGATTGATCCCTTCTCCACATGCATGCAAAATATGTAGGTACAAACAGAACCAATAATAACATAGTGCAGCAGAATGTGAATAACTGGAGGTACATCAGTACTGTTCAGCATTTAAAATAAAGAAATACATAAATTTTCCCATGTTGTTTTTAATCAGGAAATGAAAAATGTGCAAGTGAAACTTATCTGCAAGTATGATAATGAAAACCAATGAGGGAAATATACAAAATCAAAGGCAAGCTGAGACTTCATAATGCATGAAAGACTGATGGTTTCGTTTGCACATACAGCTTGCAGTTGAAATTGCTATATAACCAATGCACAGAGCAGTAATTAAAGAATAAGTAGAATAATAAAATCCATGCTGCTGAATCTAAAGAAAAAGAAAATGGCCTTGAGCCCATTGCTAATATGCCAGAAGTGTCTTAGGATTTTTGCTACTATCTTTGAAGGCTGCACAGTTACAGCTGTAGAATGCAAACCTGTATCCCATCAGCGACCATATCACTACAGACTTCAACCAAAGCTGATGTTTTAGTCTGACTGGGAAAGCAGGGAAAAAAAATGGTTCGAATGACTGGCAATGTGAAAAAAAGCTGCAGTCCTAGGAAACATAGGTTACAAAAGGAGTCTGGTCTACTGTCCTTGCACGAATGAATACAGCTCTTAAAACAGGATCCCACTGCCAAATGTAAGTGAAAAATGATGACCCAACAGGAACGTTGGTTCCCATTTGTGGAGTCTTTCACAGATTTTTTCATTGACTCTTCACAGGTAGATCCTGATACATGATCACTAGGCAAGACAGCTTCCTTTTGTGGGTTCAGTTGAAATACTGCTATTTCTGCAGTCAGTCTTTCTTTTCACCTATCAGGACAAAATACAAACAGTGCTAGTCACTTCTATTGATCTTCCACATGAGGAGTGTGAAGAATTCCAGCACTAGACAGTCAACCAGTCTTGGTAAACCCGCTCACATTTGCTAAGTATTACATCTGCTCTCAGTGATTTTTTTTTTCTTGAGGAAACTAGAATTTTCTAAATGGTGCATTTTACTGTTAAAGATGTAACTAAATGGTATTTCAGATTAAACCTCAGAACTGCAATATATCAGGATGCCAATCAAGTGAATGCTTAGAGTGCTTTTGCTGGGTTAAATATATCCAAAGGCATCTGAAGCTCCAGGTGCAAAAAAAAGTCTTACAGCTTGATTACTCCTTTCAGCTGATTTACACCACCATAAATCATCACGCTTTGGTGGACTTATTGCCTATCTGTAGCAGTGTAACTGAAAGGAGAATCAAGCCCTTTATCACTGTATTCCTGACATCAGCCTCCTCCCGAATTTGGCGAGTGGGATCCTTTTTTGAGGGCAGTCTCCCATGGTCAGTTGTAAACAAGTAACAAAGCGCAAAGCCCACTCAGGTGACTGTTCGTTTATATCCCTTTTGACACCCAAGGGGAAGATAGCAGGCTGAAGATCTGCTGCAAAAGGTCAGAGAAGAGTGGTGAAAGAGGCGCATGTTTAAACAAAGAGATTAGCCTAGATTCTTCCATAAAATTGTAAGCAGCTTCAATTATCTTTGGAAACATCAGTTCTTAGTGAATTGGGCCCTTATCTTACCCCCTAGCCATATCCCTTTCTCTCTTTGTAGTATTGATTTAGCCTTTCCTACTAATTGTCTAATTAGGTTGCTATAGCTGTTAATAGGATAGCGTGCGGACGTCTTAACCTCTGAGATCCTAATGACTTGTGCATATTAGAGCTACTATCAAATACGTATCGAATCCCTGTCTTTGTTTTAAAGCTGAAAAAATCTCTTTATATTTTACAAATGCACTTCCAAATGAGCTGTAATTACAGAAGCACAGCTCTTTTGAATCATTATCCATGCCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGTTTTCAGGTGGACTGTTTTAAAACAAAGGCAGGATTGTGGTTTTAGATAACTAGATATATGAAACTCTAGCCAAACTAACGTAGAGGTACTAGCCGTAGAGGTGCTGGCCATAGAGGAAAAGCCTCCTAAAACTGTAGCAAAACCAGTTTACACAGTCAGAGTGGTATAAGTGTTGTGATGGGAAAGAAAAAAAAAAAAAAAAAAGATCCATTCAGTGTTGCAAACTATACAGTACACTGTAAAGGTTTAATAGTGACTGAATGTGAAAGGGCAGGGGTACATTGCCTGCCACTTCAGTCTTTTCTCTGTTTACGAGGGAAACTTAACTACCTAATACATTTGTGGTGCCGCTCAGTTCAGAGGTGGAATTCACCCAGTGGGACTGACTGTTCAGCTGCTTACAAGACTCAGTGATAACTGCTTATGGTATCTGGCATGGTAGCACTGCCCAGTAGTAAATGTTTGCAGAATGCAGATCTTACACCGGTGAGAAAAGTTGTTAAGCTTAATCTGCTCCTTCCCTGCTTCTACCAAGTGGAAGAAAGTTGATCTTGATTTCACGTGGGGGATTGTTTCTCAGTGTGTACCATACTCACACATCAGTAACAGAGCAAAGAGACTGATTTCTCTGCTTGTGTGAAACCCTTCTCTACCTAACTACCATCTGGCACACATTAGTATCTTCACAAAGCTTTAGCTTCCCATTACTAAGAAATTCTCTGTGTATTTGCAGCATATGGCTGAGGATTTTTTTTTTTTTCAGAAAATGTGTCCCTTGGGCATGTATTTCCTCTAGATTGCTGTATTAAGAAAGGTTGCTCTTTAACCATACTTACGGCTTTTTCTTAAAATTGACCCTCAAACACATCTAAAATGGGCATGAAAACGCACATCAAAGACAGGTATAAAATATGATTGCTACTTGGCAAGATTTTCTTCTACCTCTATATCCAGCTCTGACTAATTGCTTTCTTATGTTGAGTACAGCTTTATTTGTAGGCTGATCAAATATTGTACACATTATTGTGGTCATTTAACAGGATATTAATTTGGAGATGTGGCTTAGTCCTTAGGAAAAAGAAGACAAGAAAATCTCATAACCGTTTTCTGGCCTGTTCTCTGTCCCATTGTTCCTCTTCTTCCTTGGGAATGAGCGCAGGAACTGACAAGCGTGAAATGGTGTAGAAGTGAAAGCTTTCAAGCTCAAGTTTCCTTGCTTCAAAAAAATCACGTGTTTTCAGCCCGTGGGACCTCTACCTGTCCTCCTGGAAACAGGCAGCCCTGCAGACCTTTGGTGATGCAGGCAGAAAGTTTGGATCACAGTCTATCATCCATCTAGCTGTGTTATCAGTGTTTCCAGCCATGCTGTGGCTTATAGGAACCTTTTAAAAGTGGGTAATATTTGGGTTCTCTTTCCTATTTAAGCAACATTAAAAGCTCTGTATTTCAACAAAATACAGCCTATAATTTGCAGTCAAAGAAAGACAGCTAGAGAGACCACACTTACTACCACGAGAGATAAAAAGTAATACAGTTTTCTTGTCAACATAAGCCTTCAGACTGAGGTCCAGTGCTCAATTAATCATGTTTATGGTTTTCTGTGGTATCTGAAGGTAGGCTCCATGGTGACAACACTGAATCTGACTCTGCAGAGCATAGTAGTTACAGGAGTTTGTTCTGTCCATGTCCTGTTTGAAGTGTGCAGCAAATCAAAAGTGCTCCTCAAAAGTATGCAGAGGAGCTACAGGCATTTTCTTGCCTTCCAAAATCATTAATACTCACCAGGACTTCTTTTAAACTGCAGTAGCATCTTAACAGAAGCCACAGATTTTTTGCTGATTTCATCAACATTTTAACCTCACAAAGCTGTTAAAAGGTCTAGATAAAATGAAGTGCATGCTTGCATCAAAAAGCTTGGACGCACTGGTGGCCAAGATTTAGATTTCTGATGGCTAGAGCAGAATTGGGAGCCTTAGATTCATTAGCTCTCTGTGCACATGCCTCTGAGAGCATGGGCCTGCATTGCTAAAGCACCGATGGAGAAGCTGCCTAAAGCAGCCTTTTCAAGGTACAGCATCCTAAAGCTTTATGTGTGTCCAGTGATGATTCAAAAATGACAGTGAAGCACAATCTCCTCACTTCCAGCTCTGTAAATTCACCTCCAAATATGGGCTCCTTGTGTAGCTGTACTTCTGCCCCAGTGAACCTCAAATGCTTTTTCTGAGAAGTATAATATTTGGGGAAGGAGAGGGGAAGAGTCCTTGCTAGAACAGTCAGTAATCTGGTGGCTGGCCTTCTCCCCATGGGAAGGACTGAAATCTAAGGTTGCTAGGCTATTAAAAGGGAGGCAGGGGAATGGAGGGCTACTCTTAGTCTGTCCAGCATTATCTAAAAAGACATCATCTGCCTTTTTGTCTGAATGATCTGATTCTACTTTTTCAAGAAAGCAGGTAAGGGATAATGGAGTTATTCCACGTTAAGGACAGAAGCAGTTTGAGTCCTGCTGAAGATAAGACATTTTTGTGCACAAAGTGAAAGGGAACTCTCAGAAGCAAGTGATTTTAAAGTCAAAATGTGGTGTGGAGGGATTTTCAATGACCTCTGTCCCAGGAGTCTAGGAGCAGACAAGGCACTGAGACATCCTGGTTGGAGCCAGCATTCAGAGACCATAAACTTCAAGCACACTGCATTTTGGGTGCTGACCTACTTCTTGGGATCAAGTTTACAAAGATGCAAATATATTTATGCTCCAGCCAAACCAGTGTTCCAGCAGCATATGTCCTCTTAGTGTGCTGTTTGTTAGGCTGTATTCAACCAGCGAGGAGTTCCTCAGCCATTTTTAGCTGTAACAGTGTGTAGAGCAGCTGTAAAACTCATCATCACTGGACTGTAATCCTCTCTTCTGGTCTAGAGGTGTGTGCTGATGTCCAGCAGCCTATGTGACAAATGCAAAGCAGATCACATCCTAAATTTTCTTCAGAATGAGTGTGCAGGCATTCCAAGGGGCCTACAGCAAGCGAGCAACGCCACACCTCTGTCCTAACAGGTCTACCAGCCAAGTGAGATGTGGCTAGCATGGTAGATATGGGTTGTTTGCCAGCTTTACATAGTAAGGCCTTTTCTTCATTGTTAATTTGAGCAGAAATAATGTGCAGCTTCATGCTCGCAGTCCTTATCTCAGCGCTGTTGTACAACACCAGCTCAGACAAGACCAGTGGTGATGGTGCAAGTGGGCATGAACCCAGCACGTCCTCCATCTCCACCCAGAGTCTGATGCCCCAGCAACCAGACTCTGTTTCTGGACACCCTCTCGTTCCCTTTGGGAACATCTGTATTGTAGTGTAGCTCTTCTGGCATTCATCTCTAGTTCGGGCTGTACTAGAAGTTGTTCCATTTTAATGCTTAAGTTGTCTTTGAAGTTGCTTTTCAACCTAAGCCACTACCAGGCAGTGTGGACTGACACTTTGGCATTGTTCAAGCTCACATGCAGAATACAGCCAAAGGATGTTTGACTAGAATGAATCATCCCCATGATGCTCTGCATACCTTTAACACTGCTGGGCAAAAACAACCATGAACTAAGCTGCAGCCAACTGAATATGCACAGTCATTGACATTATCAGACTGGCCACTGGGGAAGGTCCAAATTCTGTGCTTCCTTGGGCAGTGCTTTGCAAGGCCTTTGAAGCCTTGCTCAGCCTAATAGGTTCACACCCGAGGAAGAGCAAAGTTTGTGCTCCTGAGCATAAGGTGGCGTGGTAAGTGACTAATGAGACTTGTCTTCCCTACCTGTATTTATAATGCAACAG
Seq C2 exon
GACATTCCAGTTCACTAGTTCCAAGCACCACCTCTTCCGACTCTTGGGCTCGACAGGGTTATGATGCTAGGGGACGCATGCTGGATTGGAAGGATCCGCTTGGTTCATCCGAAAATACAGACCCATATGTGGCAGTTTCATCCCATAATCATCAAGACAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294:ENSGALT00000003608:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(9.5=75.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]