GgaINT0061035 @ galGal4
Intron Retention
Gene
ENSGALG00000002294 | SEMA6A
Description
Semaphorin-6A isoform4 [Source:UniProtKB/TrEMBL;Acc:E1C1C2]
Coordinates
chrZ:72467448-72474588:+
Coord C1 exon
chrZ:72467448-72467498
Coord A exon
chrZ:72467499-72474423
Coord C2 exon
chrZ:72474424-72474588
Length
6925 bp
Sequences
Splice sites
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
3' ss Seq
CTGTATTTATAATGCAACAGGAC
3' ss Score
5.26
Exon sequences
Seq C1 exon
ACATTTCAACTGCTTCACCTGATCATGAAATGTCTTACAACACAGTGTATG
Seq A exon
GTCAGTTTATGGGTGTTTTTTAAAAAGTCTCTCTGGAACCTTGTGTTAACTAGTAGTTCCTCTAGTCAAAGAGCCATTAACCTTTTCTTATTTGTTTTGTCTTGCCTTTGAGGGCCTAATTCACTAATCACAAGTGAAAATAAGTAATGCCTCTTGATTTGCATTCCCTCTTTTCTAGTCCTCTCTCAAAACTGCTTAAGATGGTTTATTTTATTGGTACTCCAGCAGACACGATTAAAAGCTTGTTTCATCTGAATACTCAGACAAAGGAAGACTTGGATACAGTGATGCGTATTATCTGTTCCCTGGGAAAAGCAAGATAGCTTACCTCCCGCTCATGAGATATCCAGGCTGGCATAATGACTGCTCCAGCAGCTAGTCAACGATAGCTTTGGGAAAGGATCAGAACTGTCCCTGGGTGATAGAAAGACCTCTCTTAAGAAGAAGTAATAATTACCCATGTCAGTTGAGATTGGGTTAAACCCTGAGTTACGAAAGTTTCGGTCACTTCTGCAGTGAATCATTTATGTTACCCATTCTTGCAGTATCACAATACTCACATGGTGCCTGGTCTGTAAAAAATGGAATTCACACAACAAATTGGGTGATCAAAGCTGAAAAGAAGCATTTCTGTCAGCCTAGGGTAGCAGTTTTCCTCCAGGCAGCTGTTAATCTGCACTTGCACTGCTTTGCACCGCTTTGTTCTTTGTTTGGAAGTGGATTATATTGGCACTTGGAGTGCAAAGTGTCTTCTGGAGGAATTATTGCAGAATAAATGATGACTTCAAATTCAAACCTAGATTTATATTGCAATAGCTTCTCCTTATTGGCAACCTGAACAACGATGAGCGCCCACAAGGATGTGTGATATTGTTCGCAATGAAGTCAGTGGTGAATTTCCATGTGGGATAAGAACTTACTTGTGAAATTGCTTCCAGGCTATGCAAGACTAAAAGTTCATCAGAACTGAGGCAAAATAACTGTATGTTTAGCTGAACGTAATTAGAGGTAGGCTAGTTTGAAGTTGTGAAGATGCTCATCAGATTGATCCCTTCTCCACATGCATGCAAAATATGTAGGTACAAACAGAACCAATAATAACATAGTGCAGCAGAATGTGAATAACTGGAGGTACATCAGTACTGTTCAGCATTTAAAATAAAGAAATACATAAATTTTCCCATGTTGTTTTTAATCAGGAAATGAAAAATGTGCAAGTGAAACTTATCTGCAAGTATGATAATGAAAACCAATGAGGGAAATATACAAAATCAAAGGCAAGCTGAGACTTCATAATGCATGAAAGACTGATGGTTTCGTTTGCACATACAGCTTGCAGTTGAAATTGCTATATAACCAATGCACAGAGCAGTAATTAAAGAATAAGTAGAATAATAAAATCCATGCTGCTGAATCTAAAGAAAAAGAAAATGGCCTTGAGCCCATTGCTAATATGCCAGAAGTGTCTTAGGATTTTTGCTACTATCTTTGAAGGCTGCACAGTTACAGCTGTAGAATGCAAACCTGTATCCCATCAGCGACCATATCACTACAGACTTCAACCAAAGCTGATGTTTTAGTCTGACTGGGAAAGCAGGGAAAAAAAATGGTTCGAATGACTGGCAATGTGAAAAAAAGCTGCAGTCCTAGGAAACATAGGTTACAAAAGGAGTCTGGTCTACTGTCCTTGCACGAATGAATACAGCTCTTAAAACAGGATCCCACTGCCAAATGTAAGTGAAAAATGATGACCCAACAGGAACGTTGGTTCCCATTTGTGGAGTCTTTCACAGATTTTTTCATTGACTCTTCACAGGTAGATCCTGATACATGATCACTAGGCAAGACAGCTTCCTTTTGTGGGTTCAGTTGAAATACTGCTATTTCTGCAGTCAGTCTTTCTTTTCACCTATCAGGACAAAATACAAACAGTGCTAGTCACTTCTATTGATCTTCCACATGAGGAGTGTGAAGAATTCCAGCACTAGACAGTCAACCAGTCTTGGTAAACCCGCTCACATTTGCTAAGTATTACATCTGCTCTCAGTGATTTTTTTTTTCTTGAGGAAACTAGAATTTTCTAAATGGTGCATTTTACTGTTAAAGATGTAACTAAATGGTATTTCAGATTAAACCTCAGAACTGCAATATATCAGGATGCCAATCAAGTGAATGCTTAGAGTGCTTTTGCTGGGTTAAATATATCCAAAGGCATCTGAAGCTCCAGGTGCAAAAAAAAGTCTTACAGCTTGATTACTCCTTTCAGCTGATTTACACCACCATAAATCATCACGCTTTGGTGGACTTATTGCCTATCTGTAGCAGTGTAACTGAAAGGAGAATCAAGCCCTTTATCACTGTATTCCTGACATCAGCCTCCTCCCGAATTTGGCGAGTGGGATCCTTTTTTGAGGGCAGTCTCCCATGGTCAGTTGTAAACAAGTAACAAAGCGCAAAGCCCACTCAGGTGACTGTTCGTTTATATCCCTTTTGACACCCAAGGGGAAGATAGCAGGCTGAAGATCTGCTGCAAAAGGTCAGAGAAGAGTGGTGAAAGAGGCGCATGTTTAAACAAAGAGATTAGCCTAGATTCTTCCATAAAATTGTAAGCAGCTTCAATTATCTTTGGAAACATCAGTTCTTAGTGAATTGGGCCCTTATCTTACCCCCTAGCCATATCCCTTTCTCTCTTTGTAGTATTGATTTAGCCTTTCCTACTAATTGTCTAATTAGGTTGCTATAGCTGTTAATAGGATAGCGTGCGGACGTCTTAACCTCTGAGATCCTAATGACTTGTGCATATTAGAGCTACTATCAAATACGTATCGAATCCCTGTCTTTGTTTTAAAGCTGAAAAAATCTCTTTATATTTTACAAATGCACTTCCAAATGAGCTGTAGTTACAGAAGCACAGCTCTTTTGAATCATTATCCATGCCTGTAGACCCTAGGTGCTTTTTCTCTGGTTCTATTACTTGGTTACAGCACTCCAAATGAAGAGTTTTTGCAAACAATGGAAGCAACCTAAACCAGATTTTTTTTTTTCTAAGTGTGTCTATTTTGAGTTTTGCATATTTCCTCTAAACAAAGAAGTTTGAAAAGGACTGTCTCTGCAGTTTTCAGGTGGACTGTTTTAAAACAAAGGCAGGATTGTGGTTTTAGATAACTAGATATATGAAACTCTAGCCAAACTAACGTAGAGGTACTAGCCGTAGAGGTGCTGGCCATAGAGGAAAAGCCTCCTAAAACTGTAGCAAAACCAGTTTACACAGTCAGAGTGGTATAAGTGTTGTGATGGGAAAGAAAAAAAAAAAAAAAAAAGATCCATTCAGTGTTGCAAACTATACAGTACACTGTAAAGGTTTAATAGTGACTGAATGTGAAAGGGCAGGGGTACATTGCCTGCCACTTCAGTCTTTTCTCTGTTTACGAGGGAAACTTAACTACCTAATACATTTGTGGTGCCGCTCAGTTCAGAGGTGGAATTCACCCAGTGGGACTGACTGTTCAGCTGCTTACAAGACTCAGTGATAACTGCTTATGGTATCTGGCATGGTAGCACTGCCCAGTAGTAAATGTTTGCAGAATGCAGATCTTACACCGGTGAGAAAAGTTGTTAAGCTTAATCTGCTCCTTCCCTGCTTCTACCAAGTGGAAGAAAGTTGATCTTGATTTCACGTGGGGGATTGTTTCTCAGTGTGTACCATACTCACACATCAGTAACAGAGCAAAGAGACTGATTTCTCTGCTTGTGTGAAACCCTTCTCTACCTAACTACCATCTGGCACACATTAGTATCTTCACAAAGCTTTAGCTTCCCATTACTAAGAAATTCTCTGTGTATTTGCAGCATATGGCTGAGGATTTTTTTTTTTTTCAGAAAATGTGTCCCTTGGGCATGTATTTCCTCTAGATTGCTGTATTAAGAAAGGTTGCTCTTTAACCATACTTACGGCTTTTTCTTAAAATTGACCCTCAAACACATCTAAAATGGGCATGAAAACGCACATCAAAGACAGGTATAAAATATGATTGCTACTTGGCAAGATTTTCTTCTACCTCTATATCCAGCTCTGACTAATTGCTTTCTTATGTTGAGTACAGCTTTATTTGTAGGCTGATCAAATATTGTACACATTATTGTGGTCATTTAACAGGATATTAATTTGGAGATGTGGCTTAGTCCTTAGGAAAAAGAAGACAAGAAAATCTCATAACCGTTTTCTGGCCTGTTCTCTGTCCCATTGTTCCTCTTCTTCCTTGGGAATGAGCGCAGGAACTGACAAGCGTGAAATGGTGTAGAAGTGAAAGCTTTCAAGCTCAAGTTTCCTTGCTTCAAAAAAATCACGTGTTTTCAGCCCGTGGGACCTCTACCTGTCCTCCTGGAAACAGGCAGCCCTGCAGACCTTTGGTGATGCAGGCAGAAAGTTTGGATCACAGTCTATCATCCATCTAGCTGTGTTATCAGTGTTTCCAGCCATGCTGTGGCTTATAGGAACCTTTTAAAAGTGGGTAATATTTGGGTTCTCTTTCCTATTTAAGCAACATTAAAAGCTCTGTATTTCAACAAAATACAGCCTATAATTTGCAGTCAAAGAAAGACAGCTAGAGAGACCACACTTACTACCACGAGAGATAAAAAGTAATACAGTTTTCTTGTCAACATAAGCCTTCAGACTGAGGTCCAGTGCTCAATTAATCATGTTTATGGTTTTCTGTGGTATCTGAAGGTAGGCTCCATGGTGACAACACTGAATCTGACTCTGCAGAGCATAGTAGTTACAGGAGTTTGTTCTGTCCATGTCCTGTTTGAAGTGTGCAGCAAATCAAAAGTGCTCCTCAAAAGTATGCAGAGGAGCTACAGGCATTTTCTTGCCTTCCAAAATCATTAATACTCACCAGGACTTCTTTTAAACTGCAGTAGCATCTTAACAGAAGCCACAGATTTTTTGCTGATTTCATCAACATTTTAACCTCACAAAGCTGTTAAAAGGTCTAGATAAAATGAAGTGCATGCTTGCATCAAAAAGCTTGGACGCACTGGTGGCCAAGATTTAGATTTCTGATGGCTAGAGCAGAATTGGGAGCCTTAGATTCATTAGCTCTCTGTGCACATGCCTCTGAGAGCATGGGCCTGCATTGCTAAAGCACCGATGGAGAAGCTGCCTAAAGCAGCCTTTTCAAGGTACAGCATCCTAAAGCTTTATGTGTGTCCAGTGATGATTCAAAAATGACAGTGAAGCACAATCTCCTCACTTCCAGCTCTGTAAATTCACCTCCAAATATGGGCTCCTTGTGTAGCTGTACTTCTGCCCCAGTGAACCTCAAATGCTTTTTCTGAGAAGTATAATATTTGGGGAAGGAGAGGGGAAGAGTCCTTGCTAGAACAGTCAGTAATCTGGTGGCTGGCCTTCTCCCCATGGGAAGGACTGAAATCTAAGGTTGCTAGGCTATTAAAAGGGAGGCAGGGGAATGGAGGGCTACTCTTAGTCTGTCCAGCATTATCTAAAAAGACATCATCTGCCTTTTTGTCTGAATGATCTGATTCTACTTTTTCAAGAAAGCAGGTAAGGGATAATGGAGTTATTCCACGTTAAGGACAGAAGCAGTTTGAGTCCTGCTGAAGATAAGACATTTTTGTGCACAAAGTGAAAGGGAACTCTCAGAAGCAAGTGATTTTAAAGTCAAAATGTGGTGTGGAGGGATTTTCAATGACCTCTGTCCCAGGAGTCTAGGAGCAGACAAGGCACTGAGACATCCTGGTTGGAGCCAGCATTCAGAGACCATAAACTTCAAGCACACTGCATTTTGGGTGCTGACCTACTTCTTGGGATCAAGTTTACAAAGATGCAAATATATTTATGCTCCAGCCAAACCAGTGTTCCAGCAGCATATGTCCTCTTAGTGTGCTGTTTGTTAGGCTGTATTCAACCAGCGAGGAGTTCCTCAGCCATTTTTAGCTGTAACAGTGTGTAGAGCAGCTGTAAAACTCATCATCACTGGACTGTAATCCTCTCTTCTGGTCTAGAGGTGTGTGCTGATGTCCAGCAGCCTATGTGACAAATGCAAAGCAGATCACATCCTAAATTTTCTTCAGAATGAGTGTGCAGGCATTCCAAGGGGCCTACAGCAAGCGAGCAACGCCACACCTCTGTCCTAACAGGTCTACCAGCCAAGTGAGATGTGGCTAGCATGGTAGATATGGGTTGTTTGCCAGCTTTACATAGTAAGGCCTTTTCTTCATTGTTAATTTGAGCAGAAATAATGTGCAGCTTCATGCTCGCAGTCCTTATCTCAGCGCTGTTGTACAACACCAGCTCAGACAAGACCAGTGGTGATGGTGCAAGTGGGCATGAACCCAGCACGTCCTCCATCTCCACCCAGAGTCTGATGCCCCAGCAACCAGACTCTGTTTCTGGACACCCTCTCGTTCCCTTTGGGAACATCTGTATTGTAGTGTAGCTCTTCTGGCATTCATCTCTAGTTCGGGCTGTACTAGAAGTTGTTCCATTTTAATGCTTAAGTTGTCTTTGAAGTTGCTTTTCAACCTAAGCCACTACCAGGCAGTGTGGACTGACACTTTGGCATTGTTCAAGCTCACATGCAGAATACAGCCAAAGGATGTTTGACTAGAATGAATCATCCCCATGATGCTCTGCATACCTTTAACACTGCTGGGCAAAAACAACCATGAACTAAGCTGCAGCCAACTGAATATGCACAGTCATTGACATTATCAGACTGGCCACTGGGGAAGGTCCAAATTCTGTGCTTCCTTGGGCAGTGCTTTGCAAGGCCTTTGAAGCCTTGCTCAGCCTAATAGGTTCACACCCGAGGAAGAGCAAAGTTTGTGCTCCTGAGCATAAGGTGGCGTGGTAAGTGACTAATGAGACTTGTCTTCCCTACCTGTATTTATAATGCAACAG
Seq C2 exon
GACATTCCAGTTCACTAGTTCCAAGCACCACCTCTTCCGACTCTTGGGCTCGACAGGGTTATGATGCTAGGGGACGCATGCTGGATTGGAAGGATCCGCTTGGTTCATCCGAAAATACAGACCCATATGTGGCAGTTTCATCCCATAATCATCAAGACAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294:ENSGALT00000003608:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(5.9=22.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]