GgaEX0002867 @ galGal4
Exon Skipping
Gene
ENSGALG00000002294 | SEMA6A
Description
Semaphorin-6A isoform4 [Source:UniProtKB/TrEMBL;Acc:E1C1C2]
Coordinates
chrZ:72467290-72497040:+
Coord C1 exon
chrZ:72467290-72467310
Coord A exon
chrZ:72474424-72474588
Coord C2 exon
chrZ:72495851-72497040
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTATAATGCAACAGGAC
3' ss Score
5.26
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATTCCTTCGTAGCCCTGAATG
Seq A exon
GACATTCCAGTTCACTAGTTCCAAGCACCACCTCTTCCGACTCTTGGGCTCGACAGGGTTATGATGCTAGGGGACGCATGCTGGATTGGAAGGATCCGCTTGGTTCATCCGAAAATACAGACCCATATGTGGCAGTTTCATCCCATAATCATCAAGACAAGAAGG
Seq C2 exon
GAGTGATTCGTGAGAGTTACCTGAAGGGTCATGATCAGCTGGTGCCGGTCACCCTGTTGGCAATTGCAGTAATTCTAGCTTTTGTAATGGGGGCCGTCTTTTCGGGCATCATAGTGTACTGTATCTGTGACCATCGCCGCAGAGATGTGGCTGTTGTGCAGAGAAAGGAGAAGGAACTGACCCACTCCCGCCGCGGCTCCATGAGCAGTGTAACCAAGCTCAGCGGCCTCTTTGGAGATGCTCAGTCCAAAGAACCAAAGCCTGAAGCTATCCTCACACCTTTGATGCACAATGGCAAGTTGGCTACACCAGGCAGCACTACCAAGATGCTAATCAAGGCTGACCAGCACCATCTGGACCTGGCTGCCCTGCCAACCCCGGAATCCACCCCAACCCTGCAGCAGAAAAGGAAGCCCAGCCGTGGCAGTAGAGAATGGGAAAGAAACCAGAACCTCATCAATGCCTGCACAAAAGATATCCCACCAATGGCCTCACCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294_MULTIEX1-3/3=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.196 C2=0.773
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(10.3=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTTCGTAGCCCTGAATG
R:
GCTGAGCTTGGTTACACTGCT
Band lengths:
245-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]