GgaEX0002866 @ galGal4
Exon Skipping
Gene
ENSGALG00000002294 | SEMA6A
Description
Semaphorin-6A isoform4 [Source:UniProtKB/TrEMBL;Acc:E1C1C2]
Coordinates
chrZ:72467290-72474588:+
Coord C1 exon
chrZ:72467290-72467310
Coord A exon
chrZ:72467448-72467498
Coord C2 exon
chrZ:72474424-72474588
Length
51 bp
Sequences
Splice sites
3' ss Seq
CCAATTTATTTTGTTCATAGACA
3' ss Score
6.14
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
Exon sequences
Seq C1 exon
ATTCCTTCGTAGCCCTGAATG
Seq A exon
ACATTTCAACTGCTTCACCTGATCATGAAATGTCTTACAACACAGTGTATG
Seq C2 exon
GACATTCCAGTTCACTAGTTCCAAGCACCACCTCTTCCGACTCTTGGGCTCGACAGGGTTATGATGCTAGGGGACGCATGCTGGATTGGAAGGATCCGCTTGGTTCATCCGAAAATACAGACCCATATGTGGCAGTTTCATCCCATAATCATCAAGACAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294_MULTIEX1-2/3=1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.196
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(10.3=100)
A:
PF0143720=PSI=PD(5.9=22.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTTCGTAGCCCTGAATG
R:
TTCGGATGAACCAAGCGGATC
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]