MmuEX0041633 @ mm10
Exon Skipping
Gene
ENSMUSG00000019647 | Sema6a
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:MGI Symbol;Acc:MGI:1203727]
Coordinates
chr18:47270609-47276606:-
Coord C1 exon
chr18:47276586-47276606
Coord A exon
chr18:47276419-47276469
Coord C2 exon
chr18:47270609-47270773
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTTTATCATTTTTTTATAGACA
3' ss Score
8.15
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
Exon sequences
Seq C1 exon
ATTCCTTCGTGGCACTGAATG
Seq A exon
ACATTTCAACTCCTCTACCAGATTATGAAATGTCTTTCAACAGAGTGTATG
Seq C2 exon
GGCACGCCAGTTCCCTCTATCCCAGCACCACTACGTCAGATTCGGCATCCCGAGACGGGTATGAGTCTAGGGGAGGCATGCTGGACTGGAACGACCTGCTCGAGGCACCTGGCAGCACAGACCCTTTGGGGGCAGTGTCCTCTCATAACCACCAGGACAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019647_MULTIEX1-2/3=1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(10.8=100)
A:
PF0143720=PSI=PD(3.0=11.1)
C2:
PF0143720=PSI=PD(10.3=10.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTTCGTGGCACTGAATG
R:
AAAGGGTCTGTGCTGCCAGG
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types