BtaEX0031896 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020489 | SEMA6A
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:HGNC Symbol;Acc:HGNC:10738]
Coordinates
chr7:38767895-38773352:+
Coord C1 exon
chr7:38767895-38767915
Coord A exon
chr7:38768052-38768102
Coord C2 exon
chr7:38773197-38773352
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATTCTCATTATTTTTTATAGACA
3' ss Score
5.87
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
Exon sequences
Seq C1 exon
ATTCCTTCGTGGCACTGAATG
Seq A exon
ACATTTCAACTCCTCTACCAGATCATGAAATGTCTTACAACACAGTATATG
Seq C2 exon
GGCACTCCAGTTCCCTCCTGCCCAGCACCACCACGTCCGATTCGGCGGCTCAAGAGGGGTATGAGTCTAGGGGAGGAATGATGGACTGGAAGGAGTCACCCGACAGCACAGACTCTTTGGGGGCAGTGTCTTCCCATAATCACCAAGACAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020489_MULTIEX1-1/2=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.745
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(10.4=100)
A:
PF0143720=PSI=PD(3.0=11.1)
C2:
PF0143720=PSI=PD(4.5=5.7)
Main Inclusion Isoform:
ENSBTAT00000043906fB6237
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTTCGTGGCACTGAATG
R:
CCCCAAAGAGTCTGTGCTGTC
Band lengths:
143-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development