BtaEX0031897 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020489 | SEMA6A
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:HGNC Symbol;Acc:HGNC:10738]
Coordinates
chr7:38767895-38795851:+
Coord C1 exon
chr7:38767895-38767915
Coord A exon
chr7:38773197-38773352
Coord C2 exon
chr7:38793771-38795851
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTGTGATGAAAACAGGGC
3' ss Score
4.74
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATTCCTTCGTGGCACTGAATG
Seq A exon
GGCACTCCAGTTCCCTCCTGCCCAGCACCACCACGTCCGATTCGGCGGCTCAAGAGGGGTATGAGTCTAGGGGAGGAATGATGGACTGGAAGGAGTCACCCGACAGCACAGACTCTTTGGGGGCAGTGTCTTCCCATAATCACCAAGACAAGAAGG
Seq C2 exon
GAGTGATTCGGGAGAGCTATCTCAAAGGCCACGACCAGCTCGTTCCTGTCACCCTCCTGGCCATCGCGGTCATTCTGGCTTTTGTCATGGGGGCCGTGTTCTCGGGCATCATCGTCTACTGCGTCTGCGATCACCGGCGCAAAGACGTGTCCTCCGTGCAGCGCAAGGAGAAGGAGCTCACCCACTCGCGCCGCGGCTCCATGAGCAGCGTCACCAAGCTCAGTGGCCTCTTCGGGGACACCCAATCCAAAGACCCCAAGCCAGAGGCCATCCTCACGCCACTCATGCACAACGGCAAGCTCGCCACTCCCAGCAACACCGCCAAGATGCTCATCAAGGCCGATCAGCACCACCTGGACCTGGCCGCCCTGCCCACCCCGGAGTCCACGCCAACGCTGCAGCAGAAACGCAAGCCCAGCCGTGGCAGCCGCGAGTGGGAACGGAATCAGAACCTCATCAACGCCTGCACCAAGGACATGCCCCCCATGGGCTCCCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020489_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.745 C2=0.823
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(10.4=100)
A:
PF0143720=PSI=PD(4.5=5.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTTCGTGGCACTGAATG
R:
CGAAGAGGCCACTGAGCTTG
Band lengths:
255-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development