RnoEX6058734 @ rn6
Exon Skipping
Gene
ENSRNOG00000004033 | Sema6a
Description
semaphorin 6A [Source:RGD Symbol;Acc:1305493]
Coordinates
chr18:41333551-41361155:-
Coord C1 exon
chr18:41361135-41361155
Coord A exon
chr18:41355379-41355543
Coord C2 exon
chr18:41333551-41334752
Length
165 bp
Sequences
Splice sites
3' ss Seq
TGTATTTGTGATGAAAACAGGGC
3' ss Score
3.61
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATTCCTTCGTGGCACTGAATG
Seq A exon
GGCGTGCCAGTTCCCTCTATCCCAGCACCACTACATCAGACTCAGCGTCCCGAGACGGGCATGAGTCTCAGGGAGGCATGCTGGACTGGAATGATCTGCTCAAGGCACCTGGCAACACAGACCCTTTGGGGGCAGTGTCCTCTCATAACCACCAGGACAAGAAGG
Seq C2 exon
GAGTGATTCGGGAAAGTTACCTCAAAAGCAACGACCAGCTCGTTCCTGTCACCCTTTTGGCCATTGCAGTCATTCTGGCTTTTGTCATGGGGGCAGTCTTCTCCGGCATCATCGTGTATTGTGTGTGTGATCACCGGCGCAAAGACGTGGCGGTAGTGCAACGCAAGGAGAAAGAGCTCACCCACTCGCGTCGGGGATCTATGAGCAGTGTCACCAAGCTCAGTGGCCTCTTTGGGGACAGTCAGTCCAAGGACCCAAAGCCTGAGGCCATCCTCACACCACTCATGCACAATGGCAAACTGGCCACGCCTAGCAACACCGCCAAGATGCTCATCAAGGCTGACCAGCATCACTTAGACCTCACCGCCCTGCCCACCCCGGAGTCCACCCCAACACTGCAGCAGAAGCGGAAACCCAACCGGGGCAGTCGCGAGTGGGAGAGGAACCAGAACCTCATCAATGCCTGCACCAAGGACATGCCTCCCATGGGCTCCCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004033-'16-20,'16-18,20-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.455 C2=0.785
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(10.6=100)
A:
PF0143720=PSI=PD(0.1=0.0)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTTCGTGGCACTGAATG
R:
CCACTGAGCTTGGTGACACTG
Band lengths:
247-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]