RnoEX0079382 @ rn6
Exon Skipping
Gene
ENSRNOG00000004033 | Sema6a
Description
semaphorin 6A [Source:RGD Symbol;Acc:1305493]
Coordinates
chr18:41355379-41361155:-
Coord C1 exon
chr18:41361135-41361155
Coord A exon
chr18:41360966-41361016
Coord C2 exon
chr18:41355379-41355543
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATTATCCTCATTTTTTATAGACA
3' ss Score
7.17
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
Exon sequences
Seq C1 exon
ATTCCTTCGTGGCACTGAATG
Seq A exon
ACATTTCAACTCCTCTACCAGATTATGAAATGTCTTTCAACACAGTGTATG
Seq C2 exon
GGCGTGCCAGTTCCCTCTATCCCAGCACCACTACATCAGACTCAGCGTCCCGAGACGGGCATGAGTCTCAGGGAGGCATGCTGGACTGGAATGATCTGCTCAAGGCACCTGGCAACACAGACCCTTTGGGGGCAGTGTCCTCTCATAACCACCAGGACAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004033_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.455
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(10.6=100)
A:
PF0143720=PSI=PD(3.0=11.1)
C2:
PF0143720=PSI=PD(0.1=0.0)
Main Inclusion Isoform:
ENSRNOT00000005476fB13122
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTTCGTGGCACTGAATG
R:
AAAGGGTCTGTGTTGCCAGGT
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]