GgaEX0002866 @ galGal3
Exon Skipping
Gene
ENSGALG00000002294 | SEMA6A
Description
NA
Coordinates
chrZ:70749555-70756986:+
Coord C1 exon
chrZ:70749555-70749575
Coord A exon
chrZ:70749713-70749763
Coord C2 exon
chrZ:70756822-70756986
Length
51 bp
Sequences
Splice sites
3' ss Seq
CCAATTTATTTTGTTCATAGACA
3' ss Score
6.14
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
Exon sequences
Seq C1 exon
ATTCCTTCGTAGCCCTGAATG
Seq A exon
ACATTTCAACTGCTTCACCTGATCATGAAATGTCTTACAACACAGTGTATG
Seq C2 exon
GACATTCCAGTTCACTAGTTCCAAGCACCACCTCTTCCGACTCTTGGGCTCGACAGGGTTATGATGCTAGGGGACGCATGCTGGATTGGAAGGATCCGCTTGGTTCATCCGAAAATACAGACCCATATGTGGCAGTTTCATCCCATAATCATCAAGACAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294_MULTIEX1-1/2=C1-2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.179
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(9.5=75.0)
A:
PF0143720=PSI=PD(5.9=22.2)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTTCGTAGCCCTGAATG
R:
TTCGGATGAACCAAGCGGATC
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]