MmuEX0041632 @ mm9
Exon Skipping
Gene
ENSMUSG00000019647 | Sema6a
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:MGI Symbol;Acc:MGI:1203727]
Coordinates
chr18:47404908-47436260:-
Coord C1 exon
chr18:47436240-47436260
Coord A exon
chr18:47430263-47430427
Coord C2 exon
chr18:47404908-47409238
Length
165 bp
Sequences
Splice sites
3' ss Seq
TGTATTTGTGATGAAAACAGGGC
3' ss Score
3.61
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATTCCTTCGTGGCACTGAATG
Seq A exon
GGCACGCCAGTTCCCTCTATCCCAGCACCACTACGTCAGATTCGGCATCCCGAGACGGGTATGAGTCTAGGGGAGGCATGCTGGACTGGAACGACCTGCTCGAGGCACCTGGCAGCACAGACCCTTTGGGGGCAGTGTCCTCTCATAACCACCAGGACAAGAAGG
Seq C2 exon
GAGTGATTCGGGAAAGTTACCTCAAAAGCAACGACCAGCTTGTTCCTGTCACCCTCCTGGCCATTGCAGTCATTCTGGCTTTTGTCATGGGGGCCGTCTTCTCGGGCATCATCGTGTATTGTGTGTGCGATCACCGGCGCAAAGACGTGGCAGTAGTGCAGCGCAAGGAGAAAGAGCTCACTCACTCGCGTCGGGGATCTATGAGCAGTGTCACCAAGCTCAGTGGCCTCTTTGGGGACACCCAGTCCAAGGACCCAAAGCCTGAGGCCATCCTCACACCACTCATGCACAACGGCAAGCTGGCCACGCCTAGCAACACCGCCAAGATGCTCATCAAGGCTGACCAGCATCACCTAGACCTCACCGCCCTGCCCACCCCAGAGTCCACCCCGACACTGCAGCAGAAACGGAAACCCAACCGCGGCAGTCGCGAGTGGGAGAGGAACCAGAACATCATCAATGCCTGCACCAAGGACATGCCTCCCATGGGTTCCCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019647-'21-26,'21-25,25-26
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.391 C2=0.776
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(10.8=100)
A:
PF0143720=PSI=PD(10.3=10.9)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTTCGTGGCACTGAATG
R:
CCACTGAGCTTGGTGACACTG
Band lengths:
247-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: