HsaALTA0007598-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000196189 | SEMA4A
Description
semaphorin 4A [Source:HGNC Symbol;Acc:HGNC:10729]
Coordinates
chr1:156158388-156158824:+
Coord C1 exon
chr1:156158388-156158486
Coord A exon
NA
Coord C2 exon
chr1:156158719-156158824
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
CAGCCTCTCTCCCCATTTAGGAA
3' ss Score
10.79
Exon sequences
Seq C1 exon
ACACAGTGTTTCAACTTCATCCGTGTCCTGGTTTCTTACAATGTCACCCATCTCTACACCTGCGGCACCTTCGCCTTCAGCCCTGCTTGTACCTTCATT
Seq A exon
NA
Seq C2 exon
GAACTTCAAGATTCCTACCTGTTGCCCATCTCGGAGGACAAGGTCATGGAGGGAAAAGGCCAAAGCCCCTTTGACCCCGCTCACAAGCATACGGCTGTCTTGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196189-17-23,17-22,17-21-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.096
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(14.6=100)
A:
NA
C2:
PF0140314=Sema=PD(10.6=19.4),PF0140314=Sema=FE(30.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCCATCTCTACACCTGCG
R:
TCCCTCCATGACCTTGTCCTC
Band lengths:
110-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains