RnoALTA0035594-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000019737 | Sema4a
Description
semaphorin 4A [Source:RGD Symbol;Acc:1304636]
Coordinates
chr2:187813240-187813588:-
Coord C1 exon
chr2:187813490-187813588
Coord A exon
NA
Coord C2 exon
chr2:187813240-187813268
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
CAGCCTCTTCCCCCCTCTAGGAA
3' ss Score
11.03
Exon sequences
Seq C1 exon
ACACAGTGTTTCAACTTCATTCGTGTGCTGGTCTCTTACAATGCCACTCACCTCTATGCCTGCGGGACTTTTGCCTTCAGCCCCGCCTGCACCTTCATT
Seq A exon
NA
Seq C2 exon
GAACTCCAAGATTCCTTCCTGTTGCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019737-14-21,14-20,14-19-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(32.3=100)
A:
NA
C2:
PF0140314=Sema=PD(7.1=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCATTCGTGTGCTGGTCT
R:
TGGGCAACAGGAAGGAATCTTG
Band lengths:
114-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]