HsaALTA0007980-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4 member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr2:161862874-161872384:+
Coord C1 exon
chr2:161862874-161863062
Coord A exon
chr2:161872293-161872295
Coord C2 exon
chr2:161872296-161872384
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
GTCACAACAATCTCTTTTAGCAG
3' ss Score
3.71
Exon sequences
Seq C1 exon
ATATGGTTCTTGACCAACAAGTGAGCTCAGGTCAGCTGAATGAAGATGTACGCCATAGGGTCCATGAGGCATTGATGAAACAGCATCATCATCAGAATCAGAAAAAACTCACCAACAGGATTCCCATTGTTCGTTCCTTTGCTGATATTGGCAAGAAACAGTCAGAACCAAATTCCATGGACAAAAATG
Seq A exon
CAG
Seq C2 exon
GTCAGGTTGTTTCTCCTCAGTCTGCTCCAGCCTGTGTTGAAAATAAAAATGATGTTAGCAGAGAAAACAGCACTGTTGACTTTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290-32-40,32-39-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.580 A=NA C2=0.694
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(24.2=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATTGTTCGTTCCTTTGCT
R:
GCTGGAGCAGACTGAGGAGAA
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development