MmuALTA1016112-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026904 | Slc4a10
Description
solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 [Source:MGI Symbol;Acc:MGI:2150150]
Coordinates
chr2:62234381-62243453:+
Coord C1 exon
chr2:62234381-62234569
Coord A exon
chr2:62243362-62243364
Coord C2 exon
chr2:62243365-62243453
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GCAATAACAATCTCTTTTAGCAG
3' ss Score
3.75
Exon sequences
Seq C1 exon
ATATGGTCCTTGACCAGCAGGTCAGCTCAGGCCAGCTGAATGAAGATGTTCGCCACAGGGTCCACGAAGCATTGATGAAGCAGCATCATCACCAGAATCAGAAAAAACTGGCTAACAGGATTCCTATTGTCCGATCTTTTGCTGATATTGGCAAGAAACAATCAGAACCAAATTCCATGGATAAAAATG
Seq A exon
CAG
Seq C2 exon
GTCAGGTTGTTTCTCCTCAGTCTGCTCCAGCCTGTGCTGAGAATAAAAATGATGTCAGCAGGGAAAACAGCACTGTAGACTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026904-13-24,13-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.547 A=NA C2=0.757
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(24.2=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(11.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGATCTTTTGCTGATATTGGC
R:
GCTGGAGCAGACTGAGGAGAA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types