GgaALTA1029686-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011120 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr7:20721969-20733301:-
Coord C1 exon
chr7:20733113-20733301
Coord A exon
chr7:20722058-20722060
Coord C2 exon
chr7:20721969-20722057
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
TGTAATGGTATTTCTTTTAGCAG
3' ss Score
5.68
Exon sequences
Seq C1 exon
ATATGATTCTGGACCAGCAGGTGGGCTCTGGGCAGCTCAGTGAGGATGTTCGTCATAGAGTACATGAGGCATTACTGAAACAGCATCACCATCAGAACCAGAAGAAACTGAGCAATAGGATCCCGATTGTGAGATCCTTTGCTGATATTGGAAAGAAGCAATCTGAGCCACATTCCATGGATAAAAATG
Seq A exon
CAG
Seq C2 exon
GTCAGATTGTTTCCCCACAATCTGCTCCAGCCTGTGCTGAGAACAAAAATGATGTGAGCAGAGAAAATAGCACGGTTGACTTTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120-7-10,7-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=NA C2=0.677
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(24.2=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGATTGTGAGATCCTTTGCT
R:
GGAGCAGATTGTGGGGAAACA
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]