RnoALTA0037124-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48190361-48198991:+
Coord C1 exon
chr3:48190361-48190549
Coord A exon
chr3:48198900-48198902
Coord C2 exon
chr3:48198903-48198991
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GCAATAACAATCTCTTTTAGCAG
3' ss Score
3.75
Exon sequences
Seq C1 exon
ATATGGTCCTTGACCAGCAGGTCAGCTCAGGCCAGCTGAATGAGGATGTACGCCACAGGGTCCATGAAGCCCTGATGAAGCAGCATCATCACCAGAGTCAGAAAAAGCTCACTAACAGGATTCCTATCGTCCGATCTTTTGCTGATATTGGCAAGAAACAATCAGAGCCAAATTCCATGGATAAAAATG
Seq A exon
CAG
Seq C2 exon
GTCAGGTCGTTTCTCCTCAGTCTGCTCCAGCCTGTGCTGAAAATAAAAATGACGTCAGCAGGGAAAACAGCACCGTAGACTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307-13-20,13-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.756 A=NA C2=0.967
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(21.8=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(10.0=100)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGATTCCTATCGTCCGATCT
R:
GCAGACTGAGGAGAAACGACC
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]