HsaALTA0009614-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000185278 | ZBTB37
Description
zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:28365]
Coordinates
chr1:173838063-173839743:+
Coord C1 exon
chr1:173838063-173838258
Coord A exon
chr1:173839335-173839337
Coord C2 exon
chr1:173839338-173839743
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
AATATGGTTTCTTTTTTCAGCAG
3' ss Score
6.85
Exon sequences
Seq C1 exon
CTCTCACCCCTCCAGTGCCGACGGTAGCGAAAGACTTTCCTCCAGGGGCTTCCTCACTGGGGAATTGCCGGAAAGAGCAAACAAAAAAGGCGCTGGTGTAGGCTCCAAAATAAACACATCTGAATTCATGATGGCATCGACAGAGGCTCTTATTGGATTAAAAGTTTCAAAACAAACAATAACGCTTTGGAAAAAG
Seq A exon
CAG
Seq C2 exon
GGTTGAATGCACCCTCAGGCACGACCATGGAGAAAGGTGGGAACATACAATTGGAGATTCCTGACTTCAGCAACTCTGTCCTGAGCCATCTAAACCAGTTGCGCATGCAGGGCCGTCTCTGTGATATTGTGGTCAATGTGCAAGGACAAGCTTTTCGGGCTCACAAAGTGGTGCTGGCTGCCAGCTCCCCCTATTTCCGGGATCACATGTCCTTGAATGAGATGAGTACAGTCTCCATTTCAGTCATCAAGAACCCTACTGTTTTTGAACAGCTCCTTTCTTTCTGTTACACAGGGCGGATATGCCTGCAACTGGCAGATATCATCAGCTACCTAACAGCTGCCAGTTTTCTGCAAATGCAGCATATTATAGACAAATGTACACAGATCCTGGAGGGCATTCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185278-2-7,2-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.509
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=34.1)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGATGGCATCGACAGAGG
R:
CTTTCTCCATGGTCGTGCCTG
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)