MmuALTA0020369-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000043467 | Zbtb37
Description
zinc finger and BTB domain containing 37 [Source:MGI Symbol;Acc:MGI:2444467]
Coordinates
chr1:161032438-161034284:-
Coord C1 exon
chr1:161034088-161034284
Coord A exon
chr1:161032762-161032764
Coord C2 exon
chr1:161032438-161032761
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
ACTGTGCTTTGCTCTTTCAGCAG
3' ss Score
9.88
Exon sequences
Seq C1 exon
CTCTCGCCCCTTCAGTGCCGACGCTAGAGAAAGACTTTACTCCAGGGGCTTCCTCCTCACTGGGGAATCGCTGGAAAGAGCAAACAAAAAAGGCGCTGGTGTAGGCTCCAAAATAAACATCTGAATTCGTGATGGCATCGACAGAGGCACTTAATGGATTAAAAGTTTCAAAACAAACAATAACGCTTTGGAAAAAG
Seq A exon
CAG
Seq C2 exon
GGTTGAATGTCTGCCTGTGCTTTCAGGCATGACCATGGAGAAAAGTGGGAACATACAATTGGAGATCCCCGACTTCAGCAACTCTGTTCTGAGCCATCTCAACCAGCTACGAATGCAAGGCCGGCTCTGTGATATTGTGGTCAATGTGCAAGGACAAGCTTTTCGGGCTCACAAAGTAGTACTGGCTGCCAGCTCCCCTTATTTCCGGGATCACATGTCCTTGAATGAAATGAGTACTGTGTCCATTTCTGTCATCAAGAACCCTACTGTTTTTGAGCAACTTCTTTCTTTCTGTTACACAGGGCGGATATGCCTGCAACTAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043467-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.463
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=33.9)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGTGATGGCATCGACAGAG
R:
AGCACAGGCAGACATTCAACC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types