MmuEX0052670 @ mm10
Exon Skipping
Gene
ENSMUSG00000043467 | Zbtb37
Description
zinc finger and BTB domain containing 37 [Source:MGI Symbol;Acc:MGI:2444467]
Coordinates
chr1:161031805-161034849:-
Coord C1 exon
chr1:161034778-161034849
Coord A exon
chr1:161034088-161034284
Coord C2 exon
chr1:161031805-161032761
Length
197 bp
Sequences
Splice sites
3' ss Seq
CCCGATTCTCCCTTTTACAGCTC
3' ss Score
10.78
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GGAGGAGGGGGCGGGGGGTTTCACTTCCGGGACGGTGTTCCGGCCCATTCCGGCCCATTTCCACCCCCGGAG
Seq A exon
CTCTCGCCCCTTCAGTGCCGACGCTAGAGAAAGACTTTACTCCAGGGGCTTCCTCCTCACTGGGGAATCGCTGGAAAGAGCAAACAAAAAAGGCGCTGGTGTAGGCTCCAAAATAAACATCTGAATTCGTGATGGCATCGACAGAGGCACTTAATGGATTAAAAGTTTCAAAACAAACAATAACGCTTTGGAAAAAG
Seq C2 exon
GGTTGAATGTCTGCCTGTGCTTTCAGGCATGACCATGGAGAAAAGTGGGAACATACAATTGGAGATCCCCGACTTCAGCAACTCTGTTCTGAGCCATCTCAACCAGCTACGAATGCAAGGCCGGCTCTGTGATATTGTGGTCAATGTGCAAGGACAAGCTTTTCGGGCTCACAAAGTAGTACTGGCTGCCAGCTCCCCTTATTTCCGGGATCACATGTCCTTGAATGAAATGAGTACTGTGTCCATTTCTGTCATCAAGAACCCTACTGTTTTTGAGCAACTTCTTTCTTTCTGTTACACAGGGCGGATATGCCTGCAACTAGCAGATATCATCAGCTACCTAACAGCTGCTAGTTTTCTGCAGATGCAGCATATTATAGACAAATGTACGCAGATCCTAGAGGGCATTCACTTCAAAATTAATGTGGCTGAGGTTGAAGCAGAATTAAGTCAAACAAGGACAAAGCATCAAGAGAGACCTCCAGAGTCTCATAGGGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043467_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.463
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=33.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCCGGCCCATTTCCACC
R:
TCAAGGACATGTGATCCCGGA
Band lengths:
251-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types