RnoEX0100518 @ rn6
Exon Skipping
Gene
ENSRNOG00000026907 | Zbtb37
Description
zinc finger and BTB domain containing 37 [Source:RGD Symbol;Acc:1308731]
Coordinates
chr13:78849145-78852160:-
Coord C1 exon
chr13:78852125-78852160
Coord A exon
chr13:78851448-78851643
Coord C2 exon
chr13:78849145-78850101
Length
196 bp
Sequences
Splice sites
3' ss Seq
CCCGATTCTCCCTTTTACAGCTC
3' ss Score
10.78
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTTCCGGCCCATTCCGGCCCATTTCCACCCCCGGAG
Seq A exon
CTCTCGCCCCTTCAGCGCCGACGCTAGAGAAAGACTTTACTCCAGGGGCTTCCTCCTCACTGGGGAATTGCTGGAAAGAGCAAACAAAAAGGTGCTGGTGTAGGCTCCAAAATAAACATCTGAATTCGTGATGGCATCGACCGAGGCTCTTAATGGATTAAAAGTTTCAAAACAAACAATAACGCTTTGGAAAAAG
Seq C2 exon
GGTTGAACGTCTGCCTGTACTTTCAGGCATGACCATGGAGAAAAGTGGAAACATACAACTGGAGATCCCTGACTTCAGCAACTCTGTTCTGAGCCATCTCAACCAGCTACGAATGCAAGGCCGTCTCTGTGATATTGTGGTCAATGTGCAAGGACAGGCTTTCCGGGCTCACAAAGTAGTGCTGGCTGCCAGCTCCCCTTATTTCCGGGATCACATGTCCTTGAATGAAATGAGTACTGTGTCCATTTCTGTCATCAAGAACCCTACTGTTTTTGAACAGCTTCTTTCTTTCTGTTACACAGGGCGGATATGCCTGCAACTAGCAGATATCATCAGCTACCTAACAGCTGCTAGTTTTCTGCAGATGCAGCATATTATAGACAAATGCACACAGATCCTAGAGGGCATTCACTTTAAAATTAATGTGGCTGAGGTTGAAGCAGAATTAAGTCAAACAAGGACAAAGCATCCAGAGAGACCTCCAGAGTCTCACAGGGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026907_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.455
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=33.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCCGGCCCATTTCCACC
R:
TCAAGGACATGTGATCCCGGA
Band lengths:
251-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]