RnoINT0166967 @ rn6
Intron Retention
Gene
ENSRNOG00000026907 | Zbtb37
Description
zinc finger and BTB domain containing 37 [Source:RGD Symbol;Acc:1308731]
Coordinates
chr13:78851448-78852160:-
Coord C1 exon
chr13:78852125-78852160
Coord A exon
chr13:78851644-78852124
Coord C2 exon
chr13:78851448-78851643
Length
481 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CCCGATTCTCCCTTTTACAGCTC
3' ss Score
10.78
Exon sequences
Seq C1 exon
GTTCCGGCCCATTCCGGCCCATTTCCACCCCCGGAG
Seq A exon
GTAGGTGCTGCTCCTCGACTGAGCTCGGGTCCCGCACCCCCGCCCCATTAGCCCATACCAGACGCTCCTTGGCCGCGTCTTGGTTGCAGCCAGCTCCTGGAGCGCTCAGTCGCCGCCCCACCTCCCTCCAAGCACTCGGCGACCTTCCACTCCTTTGGCTCTGGGCTGCAGAGCTCGTGGGCCCGCCCCCTTCGCGAGCCCCTCCCTCAGGACCCCGCGCGGCGGGGACACACCCAGACACACCCCCACCCCCGCAGCCTCCGCCGCCCTCTACCGAGGTCCGGGGCACCGCCCCCTTTCCCCTCCCGAGCCTCACCTGTGCGCCCGAAACTCCCTTGCCGAGGGCTCTGCTCCTCTCTCTTCCTGGCATCCGTGCCACCTCCTTGCATAGCCCCTTTTTCCCATGCTTCCTGATACTAATGGAGGCTGCCCCAGTACCTGACTGGCCAACCCCAAGCGTTCCCGATTCTCCCTTTTACAG
Seq C2 exon
CTCTCGCCCCTTCAGCGCCGACGCTAGAGAAAGACTTTACTCCAGGGGCTTCCTCCTCACTGGGGAATTGCTGGAAAGAGCAAACAAAAAGGTGCTGGTGTAGGCTCCAAAATAAACATCTGAATTCGTGATGGCATCGACCGAGGCTCTTAATGGATTAAAAGTTTCAAAACAAACAATAACGCTTTGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026907:ENSRNOT00000039082:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCCGGCCCATTTCCACC
R:
TTTTTCCAAAGCGTTATTGTTTGT
Band lengths:
222-703
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]