MmuINT1035346 @ mm10
Intron Retention
Gene
ENSMUSG00000043467 | Zbtb37
Description
zinc finger and BTB domain containing 37 [Source:MGI Symbol;Acc:MGI:2444467]
Coordinates
chr1:161034088-161034849:-
Coord C1 exon
chr1:161034778-161034849
Coord A exon
chr1:161034285-161034777
Coord C2 exon
chr1:161034088-161034284
Length
493 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CCCGATTCTCCCTTTTACAGCTC
3' ss Score
10.78
Exon sequences
Seq C1 exon
GGAGGAGGGGGCGGGGGGTTTCACTTCCGGGACGGTGTTCCGGCCCATTCCGGCCCATTTCCACCCCCGGAG
Seq A exon
GTAGGTGCTGCTCCTTGACTGGGCTCGTTCCCCGCACCCCCGCCCCGTTAGCTCATACCCGACGCTCCCGGGCCGCGTCTGGGTTGCAGCCAGCTCCTGCGGCGCTCAGTCGCTGCCCCACCTCCCCTCCCAGCACTCGGCGACCTTCCGCCCCTTTGGCTCCGGGCTGTCGAGCTCGCGGGCCCGCCCCCTTGGCGAGCCCCTCCCTCAGGACCCCGCGCGCGCGCCGGGGCCACACCCAGACACACCCCCGCCCCGGCAACCTCCGCCGCCCTAGACCGATCCCGGGGCGCCGCCCCCTTCCCGGTCCCGCGCCTCACCTGTGCGCCCGCAACTCCCTTGCCGCGGGGCTCTGCTCCTGTCGAGCTTCCCGGCATCTGTGCCACCTCCTCGCTTAGCCAGGTCCCCCTTTTCCCATGCTTCTTGACACTGATAGAGGCCTCCCCAGTACCCGACTGGCCAACCCCAGCGTTCCCGATTCTCCCTTTTACAG
Seq C2 exon
CTCTCGCCCCTTCAGTGCCGACGCTAGAGAAAGACTTTACTCCAGGGGCTTCCTCCTCACTGGGGAATCGCTGGAAAGAGCAAACAAAAAAGGCGCTGGTGTAGGCTCCAAAATAAACATCTGAATTCGTGATGGCATCGACAGAGGCACTTAATGGATTAAAAGTTTCAAAACAAACAATAACGCTTTGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043467:ENSMUST00000162226:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGTTTCACTTCCGGGA
R:
TTTTCCAAAGCGTTATTGTTTGTT
Band lengths:
254-747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types