HsaINT0184604 @ hg19
Intron Retention
Gene
ENSG00000185278 | ZBTB37
Description
zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:28365]
Coordinates
chr1:173837493-173838258:+
Coord C1 exon
chr1:173837493-173837543
Coord A exon
chr1:173837544-173838062
Coord C2 exon
chr1:173838063-173838258
Length
519 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CCCAATTCTCCCTTTTACAGCTC
3' ss Score
10.58
Exon sequences
Seq C1 exon
CACTTCCGGGACGGTGTTCCGGCCCATTCCGGCCCATTTCCACCCCCGGAG
Seq A exon
GTAGGTGCTGCTCCTTGACTGGACTCGGGCCCCACACCCCAGTGCCACTTCCCTGCACCGGGGTCACCTCGCCCGCCCTCCGCCGCAGCGCGCTCCTGGGGCGCTCAGCTACTTTCCTTCACCCCGCCTCCAGGCACCGGGCGACCTTCCACCCCCTTGGCCCCCGGCCGGGCTGATCTGCCGGACCCGCCCCCTCGCGGGGCCCCTCCCTCAGGACCCCGGGAAGGGCGGCCCCCTCCCCCACCGCAGCCGGGACACACCCAGATACGCACACCCACCTCCTGGCAGCTCCCCGCCCGCCGCCGCCTGGAGCCGGTCCCTGGGCGCCGCCCCCTTCCTAGTTCTCACCTGAGCGCTGGCTCCCCCGCCCGACGCCTTGTCCCCATCTTCTCCGAAGTTCCTCAGTGACATTTTGCCCTTTAGCCAGTTCCCCTCTCCCCAGGCTTCCTAACGCAGAAGAAAGCTGCTCAAGTGCTGGAGTGGCCAACCCCATGCCGTTCCCAATTCTCCCTTTTACAG
Seq C2 exon
CTCTCACCCCTCCAGTGCCGACGGTAGCGAAAGACTTTCCTCCAGGGGCTTCCTCACTGGGGAATTGCCGGAAAGAGCAAACAAAAAAGGCGCTGGTGTAGGCTCCAAAATAAACACATCTGAATTCATGATGGCATCGACAGAGGCTCTTATTGGATTAAAAGTTTCAAAACAAACAATAACGCTTTGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185278-ZBTB37:NM_001122770:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTCCGGCCCATTCC
R:
TCCAAAGCGTTATTGTTTGTTTTGA
Band lengths:
230-749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)