HsaEX0072139 @ hg19
Exon Skipping
Gene
ENSG00000185278 | ZBTB37
Description
zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:28365]
Coordinates
chr1:173837493-173840286:+
Coord C1 exon
chr1:173837493-173837543
Coord A exon
chr1:173838063-173838258
Coord C2 exon
chr1:173839338-173840286
Length
196 bp
Sequences
Splice sites
3' ss Seq
CCCAATTCTCCCTTTTACAGCTC
3' ss Score
10.58
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
CACTTCCGGGACGGTGTTCCGGCCCATTCCGGCCCATTTCCACCCCCGGAG
Seq A exon
CTCTCACCCCTCCAGTGCCGACGGTAGCGAAAGACTTTCCTCCAGGGGCTTCCTCACTGGGGAATTGCCGGAAAGAGCAAACAAAAAAGGCGCTGGTGTAGGCTCCAAAATAAACACATCTGAATTCATGATGGCATCGACAGAGGCTCTTATTGGATTAAAAGTTTCAAAACAAACAATAACGCTTTGGAAAAAG
Seq C2 exon
GGTTGAATGCACCCTCAGGCACGACCATGGAGAAAGGTGGGAACATACAATTGGAGATTCCTGACTTCAGCAACTCTGTCCTGAGCCATCTAAACCAGTTGCGCATGCAGGGCCGTCTCTGTGATATTGTGGTCAATGTGCAAGGACAAGCTTTTCGGGCTCACAAAGTGGTGCTGGCTGCCAGCTCCCCCTATTTCCGGGATCACATGTCCTTGAATGAGATGAGTACAGTCTCCATTTCAGTCATCAAGAACCCTACTGTTTTTGAACAGCTCCTTTCTTTCTGTTACACAGGGCGGATATGCCTGCAACTGGCAGATATCATCAGCTACCTAACAGCTGCCAGTTTTCTGCAAATGCAGCATATTATAGACAAATGTACACAGATCCTGGAGGGCATTCATTTCAAAATTAATGTGGCTGAGGTTGAAGCAGAATTAAGTCAAACAAGGACAAAGCATCAAGAGAGACCTCCAGAGTCTCACAGGGTTACACCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185278_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.526
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=34.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCCGGCCCATTTCCACC
R:
TCAAGGACATGTGATCCCGGA
Band lengths:
243-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)