MmuEX0052670 @ mm9
Exon Skipping
Gene
ENSMUSG00000043467 | Zbtb37
Description
zinc finger and BTB domain containing 37 [Source:MGI Symbol;Acc:MGI:2444467]
Coordinates
chr1:162961936-162964980:-
Coord C1 exon
chr1:162964909-162964980
Coord A exon
chr1:162964219-162964390
Coord C2 exon
chr1:162961936-162962895
Length
172 bp
Sequences
Splice sites
3' ss Seq
GCCCCTTCAGTGCCGACGCTAGA
3' ss Score
-35.92
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GGAGGAGGGGGCGGGGGGTTTCACTTCCGGGACGGTGTTCCGGCCCATTCCGGCCCATTTCCACCCCCGGAG
Seq A exon
AGAGAAAGACTTTACTCCAGGGGCTTCCTCCTCACTGGGGAATCGCTGGAAAGAGCAAACAAAAAAGGCGCTGGTGTAGGCTCCAAAATAAACATCTGAATTCGTGATGGCATCGACAGAGGCACTTAATGGATTAAAAGTTTCAAAACAAACAATAACGCTTTGGAAAAAG
Seq C2 exon
CAGGGTTGAATGTCTGCCTGTGCTTTCAGGCATGACCATGGAGAAAAGTGGGAACATACAATTGGAGATCCCCGACTTCAGCAACTCTGTTCTGAGCCATCTCAACCAGCTACGAATGCAAGGCCGGCTCTGTGATATTGTGGTCAATGTGCAAGGACAAGCTTTTCGGGCTCACAAAGTAGTACTGGCTGCCAGCTCCCCTTATTTCCGGGATCACATGTCCTTGAATGAAATGAGTACTGTGTCCATTTCTGTCATCAAGAACCCTACTGTTTTTGAGCAACTTCTTTCTTTCTGTTACACAGGGCGGATATGCCTGCAACTAGCAGATATCATCAGCTACCTAACAGCTGCTAGTTTTCTGCAGATGCAGCATATTATAGACAAATGTACGCAGATCCTAGAGGGCATTCACTTCAAAATTAATGTGGCTGAGGTTGAAGCAGAATTAAGTCAAACAAGGACAAAGCATCAAGAGAGACCTCCAGAGTCTCATAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043467-'0-3,'0-2,1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.481
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=35.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCCGGCCCATTTCCACC
R:
TCAAGGACATGTGATCCCGGA
Band lengths:
254-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types