BtaEX0040661 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004361 | ZBTB37
Description
zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:HGNC:28365]
Coordinates
chr16:56695083-56697029:+
Coord C1 exon
chr16:56695083-56695183
Coord A exon
chr16:56695715-56695913
Coord C2 exon
chr16:56696929-56697029
Length
199 bp
Sequences
Splice sites
3' ss Seq
CCCGATTCTCCCTCTTGCAGCTC
3' ss Score
11.21
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
TGATTTCCTTCCGGCACGTCGCCCGCTCCGGGGGAGGGGGTGGGGGGTTTCACTTCCGGGACGGTGTTCCGGCCCATTCCGGCCCATTTCCACCCCCGGAG
Seq A exon
CTCTCACCCCTCCAGTGCCGACGGTAGAAAAAGACCTTACTCCAGGGGCTTCCTCCTCACTGGGGAATTGCCGGAAAGAACAAACAAAAAAAAGGCGCTGGTGTAGGCTCCAAAATAAACATCTGAATTCATGATGGCATCGACAGAGGCTCTTATTGGATTAAAAGTTTCAAAACAAACAAAAACGCTTTGGAAAAAG
Seq C2 exon
CAGGGTTGAATGCCTGCCTACACCCTCAGGCACGACCATGGAGAAAAGTGGGAACATACAACTGGAGATCCCTGACTTCAGCAACTCTGTCCTGAGCCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004361-'0-1,'0-0,1-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGTTTCACTTCCGGGA
R:
GATGGCTCAGGACAGAGTTGC
Band lengths:
160-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development