RnoALTA0045291-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000026907 | Zbtb37
Description
zinc finger and BTB domain containing 37 [Source:RGD Symbol;Acc:1308731]
Coordinates
chr13:78849869-78851600:-
Coord C1 exon
chr13:78851448-78851600
Coord A exon
chr13:78850076-78850104
Coord C2 exon
chr13:78849869-78850075
Length
29 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
ACTATGGTTTGCTCTTTCAGCAG
3' ss Score
7.19
Exon sequences
Seq C1 exon
AGGGGCTTCCTCCTCACTGGGGAATTGCTGGAAAGAGCAAACAAAAAGGTGCTGGTGTAGGCTCCAAAATAAACATCTGAATTCGTGATGGCATCGACCGAGGCTCTTAATGGATTAAAAGTTTCAAAACAAACAATAACGCTTTGGAAAAAG
Seq A exon
CAGGGTTGAACGTCTGCCTGTACTTTCAG
Seq C2 exon
GCATGACCATGGAGAAAAGTGGAAACATACAACTGGAGATCCCTGACTTCAGCAACTCTGTTCTGAGCCATCTCAACCAGCTACGAATGCAAGGCCGTCTCTGTGATATTGTGGTCAATGTGCAAGGACAGGCTTTCCGGGCTCACAAAGTAGTGCTGGCTGCCAGCTCCCCTTATTTCCGGGATCACATGTCCTTGAATGAAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026907-1-4,1-3,1-2-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.455
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=33.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACCGAGGCTCTTAATGGA
R:
TGCTGAAGTCAGGGATCTCCA
Band lengths:
114-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]