HsaALTA0009734-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000125846 | ZNF133
Description
zinc finger protein 133 [Source:HGNC Symbol;Acc:12917]
Coordinates
chr20:18285652-18286451:+
Coord C1 exon
chr20:18285652-18285822
Coord A exon
chr20:18286312-18286324
Coord C2 exon
chr20:18286325-18286451
Length
13 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTGAGTGAGCAGGGCTCAGTTT
3' ss Score
-13.31
Exon sequences
Seq C1 exon
TGTGTCCTCCATTTGGAAGTAGTGCTAAGAAAATTAAAAGAATAAAACTGGGCAGGGGCATGAGAATAGGATGCAAAGATGAATTTTTGGACTGAGTGGCCAAGAAGCTCCATGGTGAGCACTCACAGTCTAAGGCTGGAAGTTTAATGAACTGTTTTCTACATTTCACAG
Seq A exon
TTTTGTGTTACAG
Seq C2 exon
GCACACATGGCATTCAGGGATGTGGCTGTGGATTTCACCCAGGATGAGTGGAGGCTGCTGAGCCCTGCTCAAAGGACTCTGTACAGAGAGGTGATGCTGGAGAACTACAGCAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125846-4-6,4-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTCCATGGTGAGCACTC
R:
CCACAGCCACATCCCTGAATG
Band lengths:
99-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)