HsaEX0073027 @ hg19
Exon Skipping
Gene
ENSG00000125846 | ZNF133
Description
zinc finger protein 133 [Source:HGNC Symbol;Acc:12917]
Coordinates
chr20:18269121-18286451:+
Coord C1 exon
chr20:18269121-18269248
Coord A exon
chr20:18278933-18279108
Coord C2 exon
chr20:18286325-18286451
Length
176 bp
Sequences
Splice sites
3' ss Seq
GTCTGCATTTCTTTGTTCAGCTT
3' ss Score
7.42
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CGCCGAGCATCCTGGGAGGTGTGGTCCGGGCGCTGTGCCGAGGATTCGGGGTAGTGTAGTCCTGGCGCCCCGCTGGAGGAGCTCCCCAGCTGGTGGCTGGAGCGACCCCTTGTTCTTTGGTGGCGCTG
Seq A exon
CTTCAAAAGTTCTGCTGCCTGAGAGTAACGTCACAGTAATGGAACGGGAAGATTCTGGAATCTGTGTCCCCACCTAGACAACGATTATACTGGCAGGATCTATCAGGTGTACCTATTTTGGAACTCTGGAGTCTAGTTGAAGGCCTCCAGTTCCCAGGGGGAAGGAAGCATGGAGG
Seq C2 exon
GCACACATGGCATTCAGGGATGTGGCTGTGGATTTCACCCAGGATGAGTGGAGGCTGCTGAGCCCTGCTCAAAGGACTCTGTACAGAGAGGTGATGCTGGAGAACTACAGCAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125846_MULTIEX1-3/8=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTGGGAGGTGTGGTCC
R:
AGTGAGACCAGGTTGCTGTAGT
Band lengths:
246-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)